R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
karyotapR
View on CRAN: Click
here
Download and install karyotapR package within the R console
Install from CRAN:
install.packages("karyotapR")
Install from Github:
library("remotes")
install_github("cran/karyotapR")
Install by package version:
library("remotes")
install_version("karyotapR", "1.0.1")
Attach the package and use:
library("karyotapR")
Maintained by
Joseph Mays
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-07
Latest Update: 2023-09-07
Description:
Analysis of DNA copy number in single cells using
custom genome-wide targeted DNA sequencing panels for the Mission Bio
Tapestri platform. Users can easily parse, manipulate, and visualize
datasets produced from the automated 'Tapestri Pipeline', with support for
normalization, clustering, and copy number calling. Functions are also
available to deconvolute multiplexed samples by genotype and parsing
barcoded reads from exogenous lentiviral constructs.
How to cite:
Joseph Mays (2023). karyotapR: DNA Copy Number Analysis for Genome-Wide Tapestri Panels. R package version 1.0.1, https://cran.r-project.org/web/packages/karyotapR. Accessed 30 Jan. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited karyotapR R package
View karyotapR citation profile
Other R packages that karyotapR depends,
imports, suggests or enhances
Complete documentation for karyotapR
Functions, R codes and Examples using
the karyotapR R package
Some associated functions: PCAKneePlot . TapestriExperiment-class . assayBoxPlot . assayHeatmap . calcCopyNumber . calcGMMCopyNumber . calcNormCounts . calcSmoothCopyNumber . callSampleLables . corner . countBarcodedReads . createTapestriExperiment . getChrOrder . getCytobands . getGMMBoundaries . getTidyData . karyotapR-package . moveNonGenomeProbes . newTapestriExperimentExample . plotCopyNumberGMM . reducedDimPlot . runClustering . runPCA . runUMAP . slotGettersSetters .
Some associated R codes: GaussianMixtureCalls.R . clustering.R . copyNumberCalculation.R . createTapestriExperiment.R . getChrOrder.R . getCytobands.R . helperFunctions.R . karyotapR-package.R . moveNonGenomeProbes.R . normalization.R . parseBarcodedReads.R . plots.R . tapestriExperimentDefinition.R . Full karyotapR package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
convertid
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in conve ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Vidal Fey (view profile)
fastmit
A mutual information estimator based on k-nearest neighbor method proposed by A. Kraskov, et al. (20 ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Shiyun Lin (view profile)
kesernetwork
A shiny app to visualize the knowledge networks for the code concepts. Using co-occurrence matrices ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Su-Chun Cheng (view profile)
GGMncv
Estimate Gaussian graphical models with nonconvex penalties ,
including ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Donald Williams (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
cinaR
Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data
analyses. This package combi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Onur Karakaslar (view profile)