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karyotapR  

DNA Copy Number Analysis for Genome-Wide Tapestri Panels
View on CRAN: Click here


Download and install karyotapR package within the R console
Install from CRAN:
install.packages("karyotapR")

Install from Github:
library("remotes")
install_github("cran/karyotapR")

Install by package version:
library("remotes")
install_version("karyotapR", "1.0.1")



Attach the package and use:
library("karyotapR")
Maintained by
Joseph Mays
[Scholar Profile | Author Map]
First Published: 2023-09-07
Latest Update: 2023-09-07
Description:
Analysis of DNA copy number in single cells using custom genome-wide targeted DNA sequencing panels for the Mission Bio Tapestri platform. Users can easily parse, manipulate, and visualize datasets produced from the automated 'Tapestri Pipeline', with support for normalization, clustering, and copy number calling. Functions are also available to deconvolute multiplexed samples by genotype and parsing barcoded reads from exogenous lentiviral constructs.
How to cite:
Joseph Mays (2023). karyotapR: DNA Copy Number Analysis for Genome-Wide Tapestri Panels. R package version 1.0.1, https://cran.r-project.org/web/packages/karyotapR. Accessed 11 Apr. 2025.
Previous versions and publish date:
No previous versions
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Complete documentation for karyotapR
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