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jointseg
View on CRAN: Click
here
Download and install jointseg package within the R console
Install from CRAN:
install.packages("jointseg")
Install from Github:
library("remotes")
install_github("cran/jointseg") Install by package version:
library("remotes")
install_version("jointseg", "1.0.3") Attach the package and use:
library("jointseg")
Maintained by
Morgane Pierre-Jean
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-11-27
Latest Update: 2025-05-14
Description:
Methods for fast segmentation of multivariate
signals into piecewise constant profiles and for generating realistic
copy-number profiles. A typical application is the joint segmentation of total
DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism
(SNP) microarrays in cancer studies. The methods are described in Pierre-Jean,
Rigaill and Neuvial (2015) .
How to cite:
Morgane Pierre-Jean (2017). jointseg: Joint Segmentation of Multivariate (Copy Number) Signals. R package version 1.0.3, https://cran.r-project.org/web/packages/jointseg. Accessed 08 Mar. 2026.
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Complete documentation for jointseg
Functions, R codes and Examples using
the jointseg R package
Some associated functions: Fpsn . PSSeg . anotherBkp . binMissingValues . defaultWeights . doCBS . doDynamicProgramming . doGFLars . doPSCBS . doPSCN . doRBS . estimateSd . getCopyNumberDataByResampling . getTpFp . getUnivJ . getUnivStat . jointSeg . leftMultiplyByInvXAtXA . leftMultiplyByXt . mapPositionsBack . modelSelection . multiplyXtXBySparse . oneBkp . plotSeg . prof . pruneByDP . randomProfile . retour_sn . segmentByGFLars . segmentByRBS .
Some associated R codes: ERMadjustment.R . PSSeg.R . anotherBkp.R . binMissingValues.R . chooseK.R . defaultWeights.R . doCBS.R . doDynamicProgramming.R . doGFLars.R . doPSCBS.R . doPSCN.R . doRBS.R . estimateSd.R . getCopyNumberDataByResampling.R . getTpFp.R . getUnivJ.R . getUnivStat.R . jointSeg.R . leftMultiplyByInvXAtXA.R . leftMultiplyByXt.R . mapPositionsBack.R . modelSelection.R . multiplyXtXBySparse.R . oneBkp.R . plotSeg.R . prof.R . pruneByDP.R . pruned_DP_C_access.R . randomProfile.R . segmentByGFLars.R . segmentByRBS.R . Full jointseg package functions and examples
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