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jackalope  

A Swift, Versatile Phylogenomic and High-Throughput Sequencing Simulator
View on CRAN: Click here


Download and install jackalope package within the R console
Install from CRAN:
install.packages("jackalope")

Install from Github:
library("remotes")
install_github("cran/jackalope")

Install by package version:
library("remotes")
install_version("jackalope", "1.1.5")



Attach the package and use:
library("jackalope")
Maintained by
Lucas A. Nell
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-06-04
Latest Update: 2023-11-28
Description:
Simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants can be simulated using summary statistics, phylogenies, Variant Call Format (VCF) files, and coalescent simulations
How to cite:
Lucas A. Nell (2019). jackalope: A Swift, Versatile Phylogenomic and High-Throughput Sequencing Simulator. R package version 1.1.5, https://cran.r-project.org/web/packages/jackalope. Accessed 29 Jan. 2025.
Previous versions and publish date:
0.1.0 (2019-06-04 16:50), 0.1.1 (2019-06-12 10:30), 0.1.2 (2019-07-11 14:12), 0.1.3 (2019-10-18 00:30), 1.0.0 (2019-11-22 08:40), 1.1.0 (2020-02-28 21:10), 1.1.1 (2020-06-15 17:30), 1.1.2 (2021-02-10 13:30), 1.1.3 (2021-07-06 06:40), 1.1.4 (2023-10-15 09:12)
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