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itsdm
View on CRAN: Click
here
Download and install itsdm package within the R console
Install from CRAN:
install.packages("itsdm")
Install from Github:
library("remotes")
install_github("cran/itsdm")
Install by package version:
library("remotes")
install_version("itsdm", "0.2.1")
Attach the package and use:
library("itsdm")
Maintained by
Lei Song
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-01-07
Latest Update: 2023-06-11
Description:
Collection of R functions to do purely presence-only species
distribution modeling with isolation forest (iForest) and its
variations such as Extended isolation forest and SCiForest. See the
details of these methods in references: Liu, F.T., Ting, K.M. and
Zhou, Z.H. (2008) , Hariri, S., Kind, M.C.
and Brunner, R.J. (2019) , Liu, F.T.,
Ting, K.M. and Zhou, Z.H. (2010) ,
Guha, S., Mishra, N., Roy, G. and Schrijvers, O. (2016)
, Cortes, D. (2021)
. Additionally, Shapley values are used to explain
model inputs and outputs. See details in references: Shapley, L.S.
(1953) , Lundberg, S.M. and Lee, S.I.
(2017) , Molnar,
C. (2020) ,
How to cite:
Lei Song (2022). itsdm: Isolation Forest-Based Presence-Only Species Distribution Modeling. R package version 0.2.1, https://cran.r-project.org/web/packages/itsdm. Accessed 03 Dec. 2024.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for itsdm
Functions, R codes and Examples using
the itsdm R package
Some associated functions: cmcc_bioclim . convert_to_pa . detect_envi_change . dim_reduce . evaluate_po . format_observation . future_cmcc_bioclim . future_worldclim2 . independent_response . isotree_po . itsdm-package . mainland_africa . marginal_response . occ_virtual_species . plot.EnviChange . plot.EnvironmentalOutlier . plot.IndependentResponse . plot.MarginalResponse . plot.PAConversion . plot.POEvaluation . plot.SHAPSpatial . plot.ShapDependence . plot.SpatialResponse . plot.VariableAnalysis . plot.VariableContribution . print.EnviChange . print.EnvironmentalOutlier . print.FormatOccurrence . print.PAConversion . print.POEvaluation . print.POIsotree . print.ReducedImageStack . print.VariableAnalysis . probability . shap_dependence . shap_spatial_response . spatial_response . suspicious_env_outliers . variable_analysis . variable_contrib . worldclim2 .
Some associated R codes: cmcc_bioclim.R . convert_to_pa.R . data.R . detect_envi_change.R . dim_reduce.R . evaluate_po.R . format_observation.R . future_cmcc_bioclim.R . future_worldclim2.R . independent_response.R . isotree_po.R . itsdm-package.R . marginal_response.R . plot.R . print.R . probability.R . shap_dependence.R . shap_spatial_response.R . spatial_response.R . suspicious_env_outliers.R . utils.R . variable_analysis.R . variable_contrib.R . worldclim2.R . zzz.R . Full itsdm package functions and examples
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