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isotracer  

Isotopic Tracer Analysis Using MCMC
View on CRAN: Click here


Download and install isotracer package within the R console
Install from CRAN:
install.packages("isotracer")

Install from Github:
library("remotes")
install_github("cran/isotracer")

Install by package version:
library("remotes")
install_version("isotracer", "1.1.8")



Attach the package and use:
library("isotracer")
Maintained by
Matthieu Bruneaux
[Scholar Profile | Author Map]
First Published: 2021-09-27
Latest Update: 2023-03-21
Description:
Implements Bayesian models to analyze data from tracer addition experiments. The implemented method was originally described in the article "A New Method to Reconstruct Quantitative Food Webs and Nutrient Flows from Isotope Tracer Addition Experiments" by L
How to cite:
Matthieu Bruneaux (2021). isotracer: Isotopic Tracer Analysis Using MCMC. R package version 1.1.8, https://cran.r-project.org/web/packages/isotracer. Accessed 05 May. 2025.
Previous versions and publish date:
1.0.4 (2021-09-27 10:50), 1.1.0 (2021-12-19 17:10), 1.1.2 (2022-02-18 10:50), 1.1.3 (2022-03-27 16:30), 1.1.4 (2023-03-21 15:10), 1.1.5 (2023-09-21 23:10), 1.1.6 (2024-05-15 10:50), 1.1.7 (2024-11-05 04:20)
Other packages that cited isotracer R package
View isotracer citation profile
Other R packages that isotracer depends, imports, suggests or enhances
Complete documentation for isotracer
Functions, R codes and Examples using the isotracer R package
Some associated functions: Math.mcmc.list . Ops.mcmc.list . Ops.prior . Ops.topology . add_covariates . add_pulse_event . aquarium_mod . aquarium_run . as.mcmc.list.tidy_flows . as.mcmc.list.tidy_steady_states . as_tbl_graph . as_tbl_graph.topology . available_priors . c.mcmc.list . calculate_steady_state . comps . constant_p . delta2prop . dic . eelgrass . exponential_p . filter . filter.ppcNetworkModel . filter_by_group . format.prior . format.prior_tibble . gamma_p . ggflows . ggtopo.networkModel . ggtopo . ggtopo.topology . groups.networkModel . hcauchy_p . isotracer-package . lalaja . li2017 . mcmc_heatmap . missing_priors . new_networkModel . normal_p . obj_sum.prior . params . pillar_shaft.prior . plot.networkModel . plot.ready_for_unit_plot . posterior_predict.networkModelStanfit . posterior_predict . predict.networkModel . print.networkModel . print.prior . print.prior_tibble . print.topology . priors . project . prop_family . quick_sankey . reexports . run_mcmc . sample_from . sample_from_prior . sample_params . sankey . scaled_beta_p . select.mcmc.list . set_half_life . set_init . set_obs . set_params . set_prior . set_prop_family . set_size_family . set_split . set_steady . set_topo . size_family . stanfit_to_named_mcmclist . sub-.networkModelStanfit . tidy_data . tidy_dpp . tidy_flows . tidy_mcmc . tidy_posterior_predict . tidy_steady_states . tidy_trajectories . topo . traceplot . trini_mod . type_sum.prior . uniform_p . 
Some associated R codes: dataset-collins2016.R . dataset-li2017.R . dataset-mcroy1970.R . datasets_aquarium_mod.R . datasets_trini_mod.R . helpers.R . helpers_methods-mcmc.list.R . helpers_model-building.R . helpers_parameter-mapping.R . helpers_plotting-sankey.R . helpers_plotting.R . helpers_predictions.R . helpers_projection-simulation.R . helpers_run-stan-common.R . helpers_run-stan-euler.R . helpers_run-stan-matrix-exp.R . helpers_topology.R . package-doc.R . stanmodels.R . ui_getters.R . ui_model-building.R . ui_others.R . ui_plotting-topology.R . ui_plotting.R . ui_predictions.R . ui_priors.R . ui_projection-simulation.R . ui_run-mcmc.R . ui_topology.R . zzz.R . zzz_reexports.R .  Full isotracer package functions and examples
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