Other packages > Find by keyword >

iq  

Protein Quantification in Mass Spectrometry-Based Proteomics
View on CRAN: Click here


Download and install iq package within the R console
Install from CRAN:
install.packages("iq")

Install from Github:
library("remotes")
install_github("cran/iq")

Install by package version:
library("remotes")
install_version("iq", "2.0.0")



Attach the package and use:
library("iq")
Maintained by
Thang Pham
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-11-15
Latest Update: 2024-12-04
Description:
An implementation of the MaxLFQ algorithm by Cox et al. (2014) in a comprehensive pipeline for processing proteomics data in data-independent acquisition mode (Pham et al. 2020 ). It offers additional options for protein quantification using the N most intense fragment ions, using all fragment ions, and a wrapper for the median polish algorithm by Tukey (1977, ISBN:0201076160). In general, the tool can be used to integrate multiple proportional observations into a single quantitative value.
How to cite:
Thang Pham (2019). iq: Protein Quantification in Mass Spectrometry-Based Proteomics. R package version 2.0.0, https://cran.r-project.org/web/packages/iq. Accessed 06 Jun. 2026.
Previous versions and publish date:
1.0 (2019-11-15 13:10), 1.1 (2019-11-16 00:20), 1.3 (2020-01-07 19:10), 1.4 (2020-04-27 02:50), 1.5 (2020-05-18 20:30), 1.7 (2020-05-27 00:10), 1.8 (2020-06-14 17:20), 1.9.1 (2021-09-15 08:40), 1.9.3 (2022-04-02 01:40), 1.9.6 (2022-04-27 00:00), 1.9.7 (2023-01-06 14:40), 1.9.9 (2023-02-27 09:22), 1.9.10 (2023-03-29 13:40), 1.9.12 (2023-12-06 22:20), 1.9 (2020-06-27 14:40), 1.10.1 (2024-12-04 14:30), 1.10 (2024-12-03 09:00), 2.0.0 (2025-10-06 09:30)
Other packages that cited iq R package
View iq citation profile
Other R packages that iq depends, imports, suggests or enhances
Complete documentation for iq
Functions, R codes and Examples using the iq R package
Some associated functions: create_protein_list . create_protein_table . extract_annotation . fast_MaxLFQ . fast_preprocess . fast_read . maxLFQ . meanInt . median_polish . plot_protein . preprocess . process_long_format . process_wide_format . spikeins . topN . 
Some associated R codes: iq-fast.R . iq.R .  Full iq package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

worrrd  
Generate Wordsearch and Crossword Puzzles
Generate wordsearch and crossword puzzles using custom lists of words (and clues).Make them easy or ...
Download / Learn more Package Citations See dependency  
odbc  
Connect to ODBC Compatible Databases (using the DBI Interface)
A DBI-compatible interface to ODBC databases. ...
Download / Learn more Package Citations See dependency  
rwavelet  
Wavelet Analysis
Perform wavelet analysis (orthogonal,translation invariant, tensorial, 1-2-3d transforms, thresholdi ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
IAPWS95  
Thermophysical Properties of Water and Steam
An implementation of the International Association for the Properties of Water (IAPWS) Formulation ...
Download / Learn more Package Citations See dependency  
BALLI  
Expression RNA-Seq Data Analysis Based on Linear Mixed Model
Analysis of gene expression RNA-seq data using Bartlett-Adjusted Likelihood-based LInear model (BALL ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA