Other packages > Find by keyword >

ips  

Interfaces to Phylogenetic Software in R
View on CRAN: Click here


Download and install ips package within the R console
Install from CRAN:
install.packages("ips")

Install from Github:
library("remotes")
install_github("cran/ips")

Install by package version:
library("remotes")
install_version("ips", "0.0.13")



Attach the package and use:
library("ips")
Maintained by
Christoph Heibl
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-11-10
Latest Update: 2025-09-03
Description:
Functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.
How to cite:
Christoph Heibl (2014). ips: Interfaces to Phylogenetic Software in R. R package version 0.0.13, https://cran.r-project.org/web/packages/ips. Accessed 09 Jun. 2026.
Previous versions and publish date:
0.0-7 (2014-11-10 00:38), 0.0.11 (2019-07-04 18:30), 0.0.12 (2024-04-23 21:50)
Other packages that cited ips R package
View ips citation profile
Other R packages that ips depends, imports, suggests or enhances
Complete documentation for ips
Functions, R codes and Examples using the ips R package
Some associated functions: DNAbin2index . aliscore . code.simple.gaps . collapseUnsupportedEdges . del.miss . deleteEmptyCells . deleteGaps . descendants . fixNodes . forceEqualTipHeights . gblocks . index2DNAbin . ips-internal . ips-package . ips.16S . ips.28S . ips.cox1 . ips.tree . mafft.merge . mafft . mrbayes.lset . mrbayes.mcmc . mrbayes . mrbayes.prset . multistate . neighboringPairs . ntip . oi . partitionfinder . pathd8 . phylo2mafft . phylo2mst . pis . prank . raxml . raxml.partitions . rbeauti . read.beast . read.beast.table . read . sister . splitIntoClades . terminalSisters . tipHeights . traitRate . trimEnds . unlistFirstLevel . write.fas . 
Some associated R codes: DNAbin2index.R . aliscore.R . are.tips.consecutive.R . assembleDataNode.R . assembleDistributionNode.R . assembleInitNode.R . assembleLoggers.R . assembleOperators.R . assembleStateNode.R . code.simple.gaps.R . collapseUnsupportedEdges.R . del.miss.R . deleteEmptyCells.R . deleteGaps.R . descendants.R . eoi.R . extractBEASTstats.R . extractMRBAYESstats.R . findORF.R . fixNodes.R . forceEqualTipHeights.R . formatSet.R . gblocks.R . index2DNAbin.R . mafft.R . mafft.merge.R . matrixBlock.R . mrbayes.R . mrbayes.lset.R . mrbayes.mcmc.R . mrbayes.prset.R . multistateMCMC.R . multistateML.R . neighboringPairs.R . noi.R . ntip.R . oi.R . partitionfinder.R . pathd8.R . phylo2mafft.R . phylo2mst.R . pis.R . prank.R . raxml.R . raxml.partitions.R . rbeauti.R . rbeauti.taxonset.R . rc.R . read.R . read.beast.R . read.beast.table.R . read.fas.R . read.mrbayes.R . read.nex.R . read.phy.R . read.starbeast.R . read.xml.R . setClock.R . setMCMC.R . sister.R . splitIntoClades.R . str2cha.R . terminal.clades.R . terminalSisters.R . tipHeights.R . traitRate.R . traitRateOutput.R . traitRateParams.R . trimEnds.R . unlistFirstLevel.R . unresolve.clade.R . write.fas.R . write.nex.R . write.phy.R .  Full ips package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

wheatmap  
Incrementally Build Complex Plots using Natural Semantics
Builds complex plots, heatmaps in particular, using natural semantics. Bigger plots can be assembled ...
Download / Learn more Package Citations See dependency  
linemap  
Line Maps
Create maps made of lines. The package contains one function: linemap(). linemap() displays a map m ...
Download / Learn more Package Citations See dependency  
stdReg  
Regression Standardization
Contains functionality for regression standardization. Four general classes of models are allowed; g ...
Download / Learn more Package Citations See dependency  
Formula  
Extended Model Formulas
Infrastructure for extended formulas with multiple parts on the right-hand side and/or multiple res ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
handyplots  
Handy Plots
Several handy plots for quickly looking at the relationship between two numeric vectors of equal len ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA