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ips  

Interfaces to Phylogenetic Software in R
View on CRAN: Click here


Download and install ips package within the R console
Install from CRAN:
install.packages("ips")

Install from Github:
library("remotes")
install_github("cran/ips")

Install by package version:
library("remotes")
install_version("ips", "0.0.12")



Attach the package and use:
library("ips")
Maintained by
Christoph Heibl
[Scholar Profile | Author Map]
First Published: 2014-11-10
Latest Update: 2019-07-04
Description:
Functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.
How to cite:
Christoph Heibl (2014). ips: Interfaces to Phylogenetic Software in R. R package version 0.0.12, https://cran.r-project.org/web/packages/ips. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.0-7 (2014-11-10 00:38), 0.0.11 (2019-07-04 18:30)
Other packages that cited ips R package
View ips citation profile
Other R packages that ips depends, imports, suggests or enhances
Complete documentation for ips
Functions, R codes and Examples using the ips R package
Some associated functions: DNAbin2index . aliscore . code.simple.gaps . collapseUnsupportedEdges . del.miss . deleteEmptyCells . deleteGaps . descendants . fixNodes . forceEqualTipHeights . gblocks . index2DNAbin . ips-internal . ips-package . ips.16S . ips.28S . ips.cox1 . ips.tree . mafft.merge . mafft . mrbayes.lset . mrbayes.mcmc . mrbayes . mrbayes.prset . multistate . neighboringPairs . ntip . oi . partitionfinder . pathd8 . phylo2mafft . phylo2mst . pis . prank . raxml . raxml.partitions . rbeauti . read.beast . read.beast.table . read . sister . splitIntoClades . terminalSisters . tipHeights . traitRate . trimEnds . unlistFirstLevel . write.fas . 
Some associated R codes: DNAbin2index.R . aliscore.R . are.tips.consecutive.R . assembleDataNode.R . assembleDistributionNode.R . assembleInitNode.R . assembleLoggers.R . assembleOperators.R . assembleStateNode.R . code.simple.gaps.R . collapseUnsupportedEdges.R . del.miss.R . deleteEmptyCells.R . deleteGaps.R . descendants.R . eoi.R . extractBEASTstats.R . extractMRBAYESstats.R . findORF.R . fixNodes.R . forceEqualTipHeights.R . formatSet.R . gblocks.R . index2DNAbin.R . mafft.R . mafft.merge.R . matrixBlock.R . mrbayes.R . mrbayes.lset.R . mrbayes.mcmc.R . mrbayes.prset.R . multistateMCMC.R . multistateML.R . neighboringPairs.R . noi.R . ntip.R . oi.R . partitionfinder.R . pathd8.R . phylo2mafft.R . phylo2mst.R . pis.R . prank.R . raxml.R . raxml.partitions.R . rbeauti.R . rbeauti.taxonset.R . rc.R . read.R . read.beast.R . read.beast.table.R . read.fas.R . read.mrbayes.R . read.nex.R . read.phy.R . read.starbeast.R . read.xml.R . setClock.R . setMCMC.R . sister.R . splitIntoClades.R . str2cha.R . terminal.clades.R . terminalSisters.R . tipHeights.R . traitRate.R . traitRateOutput.R . traitRateParams.R . trimEnds.R . unlistFirstLevel.R . unresolve.clade.R . write.fas.R . write.nex.R . write.phy.R .  Full ips package functions and examples
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