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ipADMIXTURE
View on CRAN: Click
here
Download and install ipADMIXTURE package within the R console
Install from CRAN:
install.packages("ipADMIXTURE")
Install from Github:
library("remotes")
install_github("cran/ipADMIXTURE") Install by package version:
library("remotes")
install_version("ipADMIXTURE", "0.1.2") Attach the package and use:
library("ipADMIXTURE")
Maintained by
Chainarong Amornbunchornvej
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-26
Latest Update: 2025-05-06
Description:
A data clustering package based on admixture ratios (Q matrix) of population structure. The framework is based on iterative Pruning procedure that performs data clustering by splitting a given population into subclusters until meeting the condition of stopping criteria the same as ipPCA, iNJclust, and IPCAPS frameworks. The package also provides a function to retrieve phylogeny tree that construct a neighbor-joining tree based on a similar matrix between clusters. By given multiple Q matrices with varying a number of ancestors (K), the framework define a similar value between clusters i,j as a minimum number K* that makes majority of members of two clusters are in the different clusters. This K* reflexes a minimum number of ancestors we need to splitting cluster i,j into different clusters if we assign K* clusters based on maximum admixture ratio of individuals. The publication of this package is at Chainarong Amornbunchornvej, Pongsakorn Wangkumhang, and Sissades Tongsima (2020) .
How to cite:
Chainarong Amornbunchornvej (2020). ipADMIXTURE: Iterative Pruning Population Admixture Inference Framework. R package version 0.1.2, https://cran.r-project.org/web/packages/ipADMIXTURE. Accessed 07 Mar. 2026.
Previous versions and publish date:
0.1.0 (2020-03-26 12:00)
Other packages that cited ipADMIXTURE R package
View ipADMIXTURE citation profile
Other R packages that ipADMIXTURE depends,
imports, suggests or enhances
Complete documentation for ipADMIXTURE
Functions, R codes and Examples using
the ipADMIXTURE R package
Some associated functions: UD1_Qmat . UD1labels . biclustFunc . getPhyloTree . human27pop_Qmat . human27pop_labels . ipADMIXTURE . plotAdmixClusters . plotClusterLeaves . printClustersFromLabels .
Some associated R codes: biclustFunc.R . data.R . getPhyloTree.R . ipADMIXTURE.R . plotAdmixClusters.R . plotClusterLeaves.R . printClustersFromLabels.R . Full ipADMIXTURE package functions and examples
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