Other packages > Find by keyword >

ipADMIXTURE  

Iterative Pruning Population Admixture Inference Framework
View on CRAN: Click here


Download and install ipADMIXTURE package within the R console
Install from CRAN:
install.packages("ipADMIXTURE")

Install from Github:
library("remotes")
install_github("cran/ipADMIXTURE")

Install by package version:
library("remotes")
install_version("ipADMIXTURE", "0.1.2")



Attach the package and use:
library("ipADMIXTURE")
Maintained by
Chainarong Amornbunchornvej
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-26
Latest Update: 2025-05-06
Description:
A data clustering package based on admixture ratios (Q matrix) of population structure. The framework is based on iterative Pruning procedure that performs data clustering by splitting a given population into subclusters until meeting the condition of stopping criteria the same as ipPCA, iNJclust, and IPCAPS frameworks. The package also provides a function to retrieve phylogeny tree that construct a neighbor-joining tree based on a similar matrix between clusters. By given multiple Q matrices with varying a number of ancestors (K), the framework define a similar value between clusters i,j as a minimum number K* that makes majority of members of two clusters are in the different clusters. This K* reflexes a minimum number of ancestors we need to splitting cluster i,j into different clusters if we assign K* clusters based on maximum admixture ratio of individuals. The publication of this package is at Chainarong Amornbunchornvej, Pongsakorn Wangkumhang, and Sissades Tongsima (2020) .
How to cite:
Chainarong Amornbunchornvej (2020). ipADMIXTURE: Iterative Pruning Population Admixture Inference Framework. R package version 0.1.2, https://cran.r-project.org/web/packages/ipADMIXTURE. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.1.0 (2020-03-26 12:00)
Other packages that cited ipADMIXTURE R package
View ipADMIXTURE citation profile
Other R packages that ipADMIXTURE depends, imports, suggests or enhances
Complete documentation for ipADMIXTURE
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA