Other packages > Find by keyword >

ioncopy  

Calling Copy Number Alterations in Amplicon Sequencing Data
View on CRAN: Click here


Download and install ioncopy package within the R console
Install from CRAN:
install.packages("ioncopy")

Install from Github:
library("remotes")
install_github("cran/ioncopy")

Install by package version:
library("remotes")
install_version("ioncopy", "2.2.2")



Attach the package and use:
library("ioncopy")
Maintained by
Jan Budczies
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-08-26
Latest Update: 2020-08-11
Description:
Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) .
How to cite:
Jan Budczies (2015). ioncopy: Calling Copy Number Alterations in Amplicon Sequencing Data. R package version 2.2.2, https://cran.r-project.org/web/packages/ioncopy. Accessed 08 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:50), 1.0 (2015-08-26 14:53), 2.0.1 (2018-01-16 16:39), 2.0 (2017-12-05 22:39), 2.1.0 (2018-03-14 15:03), 2.1.1 (2018-03-23 23:04)
Other packages that cited ioncopy R package
View ioncopy citation profile
Other R packages that ioncopy depends, imports, suggests or enhances
Complete documentation for ioncopy
Functions, R codes and Examples using the ioncopy R package
Some associated functions: assess.CNA . calculate.CN . call.CNA . coverage . heatmap.CNA . ioncopy-package . read.coverages . runIoncopy . summarize.CNA . 
Some associated R codes: assess.CNA.R . calculate.CN.R . call.CNA.R . heatmap.CNA.R . read.coverages.R . runIoncopy.R . summarize.CNA.R .  Full ioncopy package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
imguR  
An Imgur.com API Client Package
A complete API client for the image hosting service Imgur.com, including the an imgur graphics devic ...
Download / Learn more Package Citations See dependency  
shinymodels  
Interactive Assessments of Models
Launch a 'shiny' application for 'tidymodels' results. For classification or regression models, the ...
Download / Learn more Package Citations See dependency  
eDMA  
Dynamic Model Averaging with Grid Search
Perform dynamic model averaging with grid search as in Dangl and Halling (2012) ...
Download / Learn more Package Citations See dependency  
kriens  
Continuation Passing Style Development
Provides basic functions for Continuation-Passing Style development. ...
Download / Learn more Package Citations See dependency  

28,989

R Packages

247,686

Dependencies

76,495

Author Associations

28,990

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA