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integIRTy
View on CRAN: Click
here
Download and install integIRTy package within the R console
Install from CRAN:
install.packages("integIRTy")
Install from Github:
library("remotes")
install_github("cran/integIRTy") Install by package version:
library("remotes")
install_version("integIRTy", "1.0.8") Attach the package and use:
library("integIRTy")
Maintained by
Kevin R. Coombes
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-07-11
Latest Update: 2025-04-08
Description:
Provides a systematic framework for
integrating multiple modalities of assays profiled on the same set of
samples. The goal is to identify genes that are altered in cancer
either marginally or consistently across different assays. The
heterogeneity among different platforms and different samples are
automatically adjusted so that the overall alteration magnitude can
be accurately inferred. See Tong and Coombes (2012)
.
How to cite:
Kevin R. Coombes (2017). integIRTy: Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory. R package version 1.0.8, https://cran.r-project.org/web/packages/integIRTy. Accessed 28 Jun. 2026.
Previous versions and publish date:
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Other R packages that integIRTy depends,
imports, suggests or enhances
Complete documentation for integIRTy
Functions, R codes and Examples using
the integIRTy R package
Some associated functions: calculatePermutedScoreByGeneSampling . computeAbility . datasets . dichotomize . dichotomizeCN . dichotomizeExpr . dichotomizeMethy . fitOnSinglePlat . intIRTeasyRun . intIRTeasyRunFromRaw . simulateBinaryResponseMat .
Some associated R codes: Ii.R . Pi.R . calculatePermutedScoreByGeneSampling.R . computeAbility.R . fitOnSinglePlat.R . intIRTeasyRun.R . intIRTeasyRunFromRaw.R . miscellaneous.R . simulateBinaryResponseMat.R . thetaEst.R . Full integIRTy package functions and examples
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