Other packages > Find by keyword >

intePareto  

Integrative Analysis of RNA-Seq and ChIP-Seq Data
View on CRAN: Click here


Download and install intePareto package within the R console
Install from CRAN:
install.packages("intePareto")

Install from Github:
library("remotes")
install_github("cran/intePareto")

Install by package version:
library("remotes")
install_version("intePareto", "0.1.2")



Attach the package and use:
library("intePareto")
Maintained by
Yingying Cao
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-09
Latest Update:
Description:
Integrative analysis of gene expression RNA-Seq data and histonemodification data for user-defined sets of histone marks ChIP-Seq data todiscover consistent changes in genes between biological conditions.Additionally Pareto optimization is used to prioritize genes based on thelevel of consistent changes in both RNA-Seq and ChIP-Seq data.Method is described in Cao Y. et al. 2020 doi10.1186s12864-020-07205-6.
How to cite:
Yingying Cao (2019). intePareto: Integrative Analysis of RNA-Seq and ChIP-Seq Data. R package version 0.1.2, https://cran.r-project.org/web/packages/intePareto. Accessed 07 Jun. 2026.
Previous versions and publish date:
0.0.1 (2019-10-09 18:10), 0.1.1 (2021-06-12 00:40), 0.1.2 (2021-06-18 18:10)
Other packages that cited intePareto R package
View intePareto citation profile
Other R packages that intePareto depends, imports, suggests or enhances
Functions, R codes and Examples using the intePareto R package
Full intePareto package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

curtailment  
Finds Binary Outcome Designs Using Stochastic Curtailment
Finds single- and two-arm designs using stochastic curtailment, as described by Law et al. (2022) ...
Download / Learn more Package Citations See dependency  
embryogrowth  
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See ...
Download / Learn more Package Citations See dependency  
keep  
Arrays with Better Control over Dimension Dropping
Provides arrays with flexible control over dimension dropping when subscripting. ...
Download / Learn more Package Citations See dependency  
gRain  
Bayesian Networks
Probability propagation in graphical independence networks, also known as Bayesian networks or prob ...
Download / Learn more Package Citations See dependency  
xmlr  
Read, Write and Work with 'XML' Data
'XML' package for creating and reading and manipulating 'XML', with an object model based on 'Refere ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA