Other packages > Find by keyword >

immuneSIM  

Tunable Simulation of B- And T-Cell Receptor Repertoires
View on CRAN: Click here


Download and install immuneSIM package within the R console
Install from CRAN:
install.packages("immuneSIM")

Install from Github:
library("remotes")
install_github("cran/immuneSIM")

Install by package version:
library("remotes")
install_version("immuneSIM", "0.8.7")



Attach the package and use:
library("immuneSIM")
Maintained by
Cédric R. Weber
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-09-27
Latest Update: 2019-09-27
Description:
Simulate full B-cell and T-cell receptor repertoires using an in silico recombination process that includes a wide variety of tunable parameters to introduce noise and biases. Additional post-simulation modification functions allow the user to implant motifs or codon biases as well as remodeling sequence similarity architecture. The output repertoires contain records of all relevant repertoire dimensions and can be analyzed using provided repertoire analysis functions. Preprint is available at bioRxiv (Weber et al., 2019 ).
How to cite:
Cédric R. Weber (2019). immuneSIM: Tunable Simulation of B- And T-Cell Receptor Repertoires. R package version 0.8.7, https://cran.r-project.org/web/packages/immuneSIM. Accessed 03 Dec. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited immuneSIM R package
View immuneSIM citation profile
Other R packages that immuneSIM depends, imports, suggests or enhances
Complete documentation for immuneSIM
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

donut  
Nearest Neighbour Search with Variables on a Torus
Finds the k nearest neighbours in a dataset of specified points, adding the option to wrap certain ...
Download / Learn more Package Citations See dependency  
FSInteract  
Fast Searches for Interactions
Performs fast detection of interactions in large-scale data using the method of random intersection ...
Download / Learn more Package Citations See dependency  
CRANsearcher  
RStudio Addin for Searching Packages in CRAN Database Based on Keywords
One of the strengths of R is its vast package ecosystem. Indeed, R packages extend from visualizatio ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
EDOtrans  
Euclidean Distance-Optimized Data Transformation
A data transformation method which takes into account the special property of scale non-invariance w ...
Download / Learn more Package Citations See dependency  
telemac  
R Interface to the TELEMAC Model Suite
An R interface to the TELEMAC suite for modelling of free surface flow. This includes methods for m ...
Download / Learn more Package Citations See dependency  

23,310

R Packages

200,798

Dependencies

63,203

Author Associations

23,278

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA