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immuneSIM  

Tunable Simulation of B- And T-Cell Receptor Repertoires
View on CRAN: Click here


Download and install immuneSIM package within the R console
Install from CRAN:
install.packages("immuneSIM")

Install from Github:
library("remotes")
install_github("cran/immuneSIM")

Install by package version:
library("remotes")
install_version("immuneSIM", "0.8.7")



Attach the package and use:
library("immuneSIM")
Maintained by
Cédric R. Weber
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-09-27
Latest Update: 2019-09-27
Description:
Simulate full B-cell and T-cell receptor repertoires using an in silico recombination process that includes a wide variety of tunable parameters to introduce noise and biases. Additional post-simulation modification functions allow the user to implant motifs or codon biases as well as remodeling sequence similarity architecture. The output repertoires contain records of all relevant repertoire dimensions and can be analyzed using provided repertoire analysis functions. Preprint is available at bioRxiv (Weber et al., 2019 ).
How to cite:
Cédric R. Weber (2019). immuneSIM: Tunable Simulation of B- And T-Cell Receptor Repertoires. R package version 0.8.7, https://cran.r-project.org/web/packages/immuneSIM
Previous versions and publish date:
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