Other packages > Find by keyword >

idmodelr  

Infectious Disease Model Library and Utilities
View on CRAN: Click here


Download and install idmodelr package within the R console
Install from CRAN:
install.packages("idmodelr")

Install from Github:
library("remotes")
install_github("cran/idmodelr")

Install by package version:
library("remotes")
install_version("idmodelr", "0.4.0")



Attach the package and use:
library("idmodelr")
Maintained by
Sam Abbott
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-01
Latest Update: 2022-09-02
Description:
Explore a range of infectious disease models in a consistent framework. The primary aim of 'idmodelr' is to provide a library of infectious disease models for researchers, students, and other interested individuals. These models can be used to understand the underlying dynamics and as a reference point when developing models for research. 'idmodelr' also provides a range of utilities. These include: plotting functionality; a simulation wrapper; scenario analysis tooling; an interactive dashboard; tools for handling mult-dimensional models; and both model and parameter look up tables. Unlike other modelling packages such as 'pomp' (), 'libbi' () and 'EpiModel' (), 'idmodelr' serves primarily as an educational resource. It is most comparable to epirecipes () but provides a more consistent framework, an R based workflow, and additional utility tooling. After users have explored model dynamics with 'idmodelr' they may then implement their model using one of these packages in order to utilise the model fitting tools they provide. For newer modellers, this package reduces the barrier to entry by containing multiple infectious disease models, providing a consistent framework for simulation and visualisation, and signposting towards other, more research focussed, resources.
How to cite:
Sam Abbott (2019). idmodelr: Infectious Disease Model Library and Utilities. R package version 0.4.0, https://cran.r-project.org/web/packages/idmodelr
Previous versions and publish date:
0.3.0 (2019-08-01 11:20), 0.3.1 (2019-09-11 00:50), 0.3.2 (2020-06-11 16:20)
Other packages that cited idmodelr R package
View idmodelr citation profile
Other R packages that idmodelr depends, imports, suggests or enhances
Functions, R codes and Examples using the idmodelr R package
Some associated functions: SEIRS_demographics_ode . SEIRS_ode . SEIR_demographics_ode . SEIR_ode . SEIS_demographics_ode . SEIS_ode . SEI_demographics_ode . SEI_ode . SHLIR_demographics_ode . SHLIR_ode . SHLITR_demographics_ode . SHLITR_ode . SHLITR_risk_demographics_ode . SHLITR_risk_ode . SIRS_demographics_ode . SIRS_ode . SIRS_vaccination_demographics_ode . SIRS_vaccination_ode . SIR_demographics_ode . SIR_ode . SIR_vaccination_demographics_ode . SIR_vaccination_ode . SIS_demographics_ode . SIS_ode . SI_demographics_ode . SI_ode . add_pointer_struct . aggregate_model . aggregate_model_internal . combine_strat_model_output . combine_to_age_model . estimate_norm_dist_from_ci . gather_strat_multi_variable . gather_strat_variable . generate_parameter_permutations . idmodelr-package . model_details . model_df_to_vector . parameter_details . plot_model . required_parameters . scenario_analysis . simulate_model . solve_ode . summarise_model . summarise_strat_var . summarise_var_by_strat . 
Some associated R codes: SEI.R . SEIR.R . SEIRS.R . SEIS.R . SHLIR.R . SHLITR.R . SI.R . SIR.R . SIRS.R . SIS.R . add_pointer_struct.R . aggregate_model.R . aggregate_model_internal.R . combine_strat_model_output.R . combine_to_age_model.R . estimate_norm_dist_from_ci.R . gather_strat_multi_variable.R . gather_strat_variable.R . generate_parameter_permutations.R . idmodelr.R . model_details.R . model_df_to_vector.R . parameter_details.R . plot_model.R . required_parameters.R . scenario_analysis.R . simulate_model.R . solve.R . summarise_model.R . summarise_strat_var.R . summarise_var_by_strat.R .  Full idmodelr package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

FMCCSD  
Efficient Estimation of Clustered Current Status Data
Current status data abounds in the field of epidemiology and public health, where the only observab ...
Download / Learn more Package Citations See dependency  
bizicount  
Bivariate Zero-Inflated Count Models Using Copulas
Maximum likelihood estimation of copula-based zero-inflated (and non-inflated) Poisson and negative ...
Download / Learn more Package Citations See dependency  
QuantileNPCI  
Nonparametric Confidence Intervals for Quantiles
Based on Alan D. Hutson (1999) , "Calculating nonparametric confidence i ...
Download / Learn more Package Citations See dependency  
Maintainer: Li Yan (view profile)
srm  
Structural Equation Modeling for the Social Relations Model
Provides functionality for structural equation modeling for the social relations model (Kenny & ...
Download / Learn more Package Citations See dependency  
factorplot  
Graphical Presentation of Simple Contrasts
Methods to calculate, print, summarize and plot pairwise differences from GLMs, GLHT or Multinomial ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resizer for Images, Tables and Fancy Resizable Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns