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ibdfindr  

HMM Toolkit for Inferring IBD Segments from SNP Genotypes
View on CRAN: Click here


Download and install ibdfindr package within the R console
Install from CRAN:
install.packages("ibdfindr")

Install from Github:
library("remotes")
install_github("cran/ibdfindr")

Install by package version:
library("remotes")
install_version("ibdfindr", "0.3.1")



Attach the package and use:
library("ibdfindr")
Maintained by
Magnus Dehli Vigeland
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-08-18
Latest Update: 2025-08-18
Description:
Implements continuous-time hidden Markov models (HMMs) to infer identity-by-descent (IBD) segments shared by two individuals from their single-nucleotide polymorphism (SNP) genotypes. Provides posterior probabilities at each marker (forward-backward algorithm), prediction of IBD segments (Viterbi algorithm), and functions for visualising results. Supports both autosomal data and X-chromosomal data.
How to cite:
Magnus Dehli Vigeland (2025). ibdfindr: HMM Toolkit for Inferring IBD Segments from SNP Genotypes. R package version 0.3.1, https://cran.r-project.org/web/packages/ibdfindr. Accessed 06 Aug. 2026.
Previous versions and publish date:
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Complete documentation for ibdfindr
Functions, R codes and Examples using the ibdfindr R package
Full ibdfindr package functions and examples
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