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ibdfindr
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Download and install ibdfindr package within the R console
Install from CRAN:
install.packages("ibdfindr")
Install from Github:
library("remotes")
install_github("cran/ibdfindr") Install by package version:
library("remotes")
install_version("ibdfindr", "0.3.1") Attach the package and use:
library("ibdfindr")
Maintained by
Magnus Dehli Vigeland
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First Published: 2025-08-18
Latest Update: 2025-08-18
Description:
Implements continuous-time hidden Markov models (HMMs) to infer identity-by-descent (IBD) segments shared by two individuals from their single-nucleotide polymorphism (SNP) genotypes. Provides posterior probabilities at each marker (forward-backward algorithm), prediction of IBD segments (Viterbi algorithm), and functions for visualising results. Supports both autosomal data and X-chromosomal data.
How to cite:
Magnus Dehli Vigeland (2025). ibdfindr: HMM Toolkit for Inferring IBD Segments from SNP Genotypes. R package version 0.3.1, https://cran.r-project.org/web/packages/ibdfindr. Accessed 26 Jun. 2026.
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