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iNEXT.3D  

Interpolation and Extrapolation for Three Dimensions of Biodiversity
View on CRAN: Click here


Download and install iNEXT.3D package within the R console
Install from CRAN:
install.packages("iNEXT.3D")

Install from Github:
library("remotes")
install_github("cran/iNEXT.3D")

Install by package version:
library("remotes")
install_version("iNEXT.3D", "1.0.6")



Attach the package and use:
library("iNEXT.3D")
Maintained by
Anne Chao
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-02-12
Latest Update: 2024-03-02
Description:
Biodiversity is a multifaceted concept covering different levels of organization from genes to ecosystems. 'iNEXT.3D' extends 'iNEXT' to include three dimensions (3D) of biodiversity, i.e., taxonomic diversity (TD), phylogenetic diversity (PD) and functional diversity (FD). This package provides functions to compute standardized 3D diversity estimates with a common sample size or sample coverage. A unified framework based on Hill numbers and their generalizations (Hill-Chao numbers) are used to quantify 3D. All 3D estimates are in the same units of species/lineage equivalents and can be meaningfully compared. The package features size- and coverage-based rarefaction and extrapolation sampling curves to facilitate rigorous comparison of 3D diversity across individual assemblages. Asymptotic 3D diversity estimates are also provided. See Chao et al. (2021) for more details.
How to cite:
Anne Chao (2024). iNEXT.3D: Interpolation and Extrapolation for Three Dimensions of Biodiversity. R package version 1.0.6, https://cran.r-project.org/web/packages/iNEXT.3D. Accessed 07 Nov. 2024.
Previous versions and publish date:
1.0.0 (2024-02-12 17:20), 1.0.1 (2024-02-19 09:20), 1.0.2 (2024-03-02 14:30), 1.0.3 (2024-03-25 08:00), 1.0.4 (2024-03-28 17:20), 1.0.5 (2024-06-07 00:50)
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Complete documentation for iNEXT.3D
Functions, R codes and Examples using the iNEXT.3D R package
Full iNEXT.3D package functions and examples
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