Other packages > Find by keyword >

iGSEA  

Integrative Gene Set Enrichment Analysis Approaches
View on CRAN: Click here


Download and install iGSEA package within the R console
Install from CRAN:
install.packages("iGSEA")

Install from Github:
library("remotes")
install_github("cran/iGSEA")

Install by package version:
library("remotes")
install_version("iGSEA", "1.2")



Attach the package and use:
library("iGSEA")
Maintained by
Wentao Lu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-12
Latest Update: 2017-05-12
Description:
To integrate multiple GSEA studies, we propose a hybrid strategy, iGSEA-AT, for choosing random effects (RE) versus fixed effect (FE) models, with an attempt to achieve the potential maximum statistical efficiency as well as stability in performance in various practical situations. In addition to iGSEA-AT, this package also provides options to perform integrative GSEA with testing based on a FE model (iGSEA-FE) and testing based on a RE model (iGSEA-RE). The approaches account for different set sizes when testing a database of gene sets. The function is easy to use, and the three approaches can be applied to both binary and continuous phenotypes.
How to cite:
Wentao Lu (2017). iGSEA: Integrative Gene Set Enrichment Analysis Approaches. R package version 1.2, https://cran.r-project.org/web/packages/iGSEA. Accessed 05 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited iGSEA R package
View iGSEA citation profile
Other R packages that iGSEA depends, imports, suggests or enhances
Complete documentation for iGSEA
Functions, R codes and Examples using the iGSEA R package
Some associated functions: iGSEA-package . 
Some associated R codes: igsea.test.R .  Full iGSEA package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA