Other packages > Find by keyword >

iGSEA  

Integrative Gene Set Enrichment Analysis Approaches
View on CRAN: Click here


Download and install iGSEA package within the R console
Install from CRAN:
install.packages("iGSEA")

Install from Github:
library("remotes")
install_github("cran/iGSEA")

Install by package version:
library("remotes")
install_version("iGSEA", "1.2")



Attach the package and use:
library("iGSEA")
Maintained by
Wentao Lu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-12
Latest Update: 2017-05-12
Description:
To integrate multiple GSEA studies, we propose a hybrid strategy, iGSEA-AT, for choosing random effects (RE) versus fixed effect (FE) models, with an attempt to achieve the potential maximum statistical efficiency as well as stability in performance in various practical situations. In addition to iGSEA-AT, this package also provides options to perform integrative GSEA with testing based on a FE model (iGSEA-FE) and testing based on a RE model (iGSEA-RE). The approaches account for different set sizes when testing a database of gene sets. The function is easy to use, and the three approaches can be applied to both binary and continuous phenotypes.
How to cite:
Wentao Lu (2017). iGSEA: Integrative Gene Set Enrichment Analysis Approaches. R package version 1.2, https://cran.r-project.org/web/packages/iGSEA. Accessed 18 Sep. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited iGSEA R package
View iGSEA citation profile
Other R packages that iGSEA depends, imports, suggests or enhances
Complete documentation for iGSEA
Functions, R codes and Examples using the iGSEA R package
Some associated functions: iGSEA-package . 
Some associated R codes: igsea.test.R .  Full iGSEA package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

injectoR  
R Dependency Injection
R dependency injection framework. Dependency injection allows a program design to follow the depend ...
Download / Learn more Package Citations See dependency  
data360r  
Wrapper for 'TCdata360' and 'Govdata360' API
Makes it easy to engage with the Application Program Interface (API) of the 'TCdata360' and 'Govdat ...
Download / Learn more Package Citations See dependency  
downlit  
Syntax Highlighting and Automatic Linking
Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pk ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
eyelinker  
Import ASC Files from EyeLink Eye Trackers
Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for ...
Download / Learn more Package Citations See dependency  
hmeasure  
The H-Measure and Other Scalar Classification Performance Metrics
Classification performance metrics that are derived from the ROC curve of a classifier. The package ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA