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iDOS
View on CRAN: Click
here
Download and install iDOS package within the R console
Install from CRAN:
install.packages("iDOS")
Install from Github:
library("remotes")
install_github("cran/iDOS")
Install by package version:
library("remotes")
install_version("iDOS", "1.0.1")
Attach the package and use:
library("iDOS")
Maintained by
Syed Haider
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-07-27
Latest Update: 2023-08-18
Description:
A method to integrate molecular profiles of cancer patients (gene copy number and mRNA abundance) to
identify candidate gain of function alterations. These candidate alterations can be subsequently further tested
to discover cancer driver alterations. Briefly, this method tests of genomic correlates of mRNA dysregulation and prioritise
those where DNA gains/amplifications are associated with elevated mRNA expression of the same gene. For details see,
Haider S et al. (2016) "Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxia", Genome Biology, .
How to cite:
Syed Haider (2016). iDOS: Integrated Discovery of Oncogenic Signatures. R package version 1.0.1, https://cran.r-project.org/web/packages/iDOS
Previous versions and publish date:
1.0.0 (2016-07-27 20:25)
Other packages that cited iDOS R package
View iDOS citation profile
Other R packages that iDOS depends,
imports, suggests or enhances
Functions, R codes and Examples using
the iDOS R package
Some associated functions: create.counts.table . create.training.validation.split . estimate.expression.cna.correlation . estimate.null.distribution.correlation . find.DE.features . get.program.defaults . get.test.data . get.top.features . iDOS-package . load.datasets .
Some associated R codes: create.counts.table.R . create.training.validation.split.R . estimate.expression.cna.correlation.R . estimate.null.distribution.correlation.R . find.DE.features.R . get.program.defaults.R . get.test.data.R . get.top.features.R . load.datasets.R . Full iDOS package functions and examples
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