Other packages > Find by keyword >

iDOS  

Integrated Discovery of Oncogenic Signatures
View on CRAN: Click here


Download and install iDOS package within the R console
Install from CRAN:
install.packages("iDOS")

Install from Github:
library("remotes")
install_github("cran/iDOS")

Install by package version:
library("remotes")
install_version("iDOS", "1.0.1")



Attach the package and use:
library("iDOS")
Maintained by
Syed Haider
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-07-27
Latest Update: 2024-03-11
Description:
A method to integrate molecular profiles of cancer patients (gene copy number and mRNA abundance) to identify candidate gain of function alterations. These candidate alterations can be subsequently further tested to discover cancer driver alterations. Briefly, this method tests of genomic correlates of mRNA dysregulation and prioritise those where DNA gains/amplifications are associated with elevated mRNA expression of the same gene. For details see, Haider S et al. (2016) "Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxia", Genome Biology, .
How to cite:
Syed Haider (2016). iDOS: Integrated Discovery of Oncogenic Signatures. R package version 1.0.1, https://cran.r-project.org/web/packages/iDOS. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:48), 1.0.0 (2016-07-27 20:25)
Other packages that cited iDOS R package
View iDOS citation profile
Other R packages that iDOS depends, imports, suggests or enhances
Complete documentation for iDOS
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

noisyr  
Noise Quantification in High Throughput Sequencing Output
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency  
dcov  
A Fast Implementation of Distance Covariance
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency  
dhReg  
Dynamic Harmonic Regression
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
kernelPSI  
Post-Selection Inference for Nonlinear Variable Selection
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA