Other packages > Find by keyword >

iDOS  

Integrated Discovery of Oncogenic Signatures
View on CRAN: Click here


Download and install iDOS package within the R console
Install from CRAN:
install.packages("iDOS")

Install from Github:
library("remotes")
install_github("cran/iDOS")

Install by package version:
library("remotes")
install_version("iDOS", "1.0.1")



Attach the package and use:
library("iDOS")
Maintained by
Syed Haider
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-07-27
Latest Update: 2024-03-11
Description:
A method to integrate molecular profiles of cancer patients (gene copy number and mRNA abundance) to identify candidate gain of function alterations. These candidate alterations can be subsequently further tested to discover cancer driver alterations. Briefly, this method tests of genomic correlates of mRNA dysregulation and prioritise those where DNA gains/amplifications are associated with elevated mRNA expression of the same gene. For details see, Haider S et al. (2016) "Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxia", Genome Biology, .
How to cite:
Syed Haider (2016). iDOS: Integrated Discovery of Oncogenic Signatures. R package version 1.0.1, https://cran.r-project.org/web/packages/iDOS. Accessed 05 Jun. 2026.
Previous versions and publish date:
1.0.0 (2016-07-27 20:25)
Other packages that cited iDOS R package
View iDOS citation profile
Other R packages that iDOS depends, imports, suggests or enhances
Complete documentation for iDOS
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA