Other packages > Find by keyword >

iDOS  

Integrated Discovery of Oncogenic Signatures
View on CRAN: Click here


Download and install iDOS package within the R console
Install from CRAN:
install.packages("iDOS")

Install from Github:
library("remotes")
install_github("cran/iDOS")

Install by package version:
library("remotes")
install_version("iDOS", "1.0.1")



Attach the package and use:
library("iDOS")
Maintained by
Syed Haider
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-07-27
Latest Update: 2023-08-18
Description:
A method to integrate molecular profiles of cancer patients (gene copy number and mRNA abundance) to identify candidate gain of function alterations. These candidate alterations can be subsequently further tested to discover cancer driver alterations. Briefly, this method tests of genomic correlates of mRNA dysregulation and prioritise those where DNA gains/amplifications are associated with elevated mRNA expression of the same gene. For details see, Haider S et al. (2016) "Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxia", Genome Biology, .
How to cite:
Syed Haider (2016). iDOS: Integrated Discovery of Oncogenic Signatures. R package version 1.0.1, https://cran.r-project.org/web/packages/iDOS. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.0 (2016-07-27 20:25)
Other packages that cited iDOS R package
View iDOS citation profile
Other R packages that iDOS depends, imports, suggests or enhances
Complete documentation for iDOS
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA