Other packages > Find by keyword >

iCAMP  

Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis
View on CRAN: Click here


Download and install iCAMP package within the R console
Install from CRAN:
install.packages("iCAMP")

Install from Github:
library("remotes")
install_github("cran/iCAMP")

Install by package version:
library("remotes")
install_version("iCAMP", "1.5.12")



Attach the package and use:
library("iCAMP")
Maintained by
Daliang Ning
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-09-09
Latest Update: 2022-06-01
Description:
To implement a general framework to quantitatively infer Community Assembly Mechanisms by Phylogenetic-bin-based null model analysis, abbreviated as 'iCAMP' (Ning et al 2020) . It can quantitatively assess the relative importance of different community assembly processes, such as selection, dispersal, and drift, for both communities and each phylogenetic group ('bin'). Each bin usually consists of different taxa from a family or an order. The package also provides functions to implement some other published methods, including neutral taxa percentage (Burns et al 2016) based on neutral theory model and quantifying assembly processes based on entire-community null models ('QPEN', Stegen et al 2013) . It also includes some handy functions, particularly for big datasets, such as phylogenetic and taxonomic null model analysis at both community and bin levels, between-taxa niche difference and phylogenetic distance calculation, phylogenetic signal test within phylogenetic groups, midpoint root of big trees, etc. Version 1.3.x mainly improved the function for 'QPEN' and added function 'icamp.cate()' to summarize 'iCAMP' results for different categories of taxa (e.g. core versus rare taxa).
How to cite:
Daliang Ning (2020). iCAMP: Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis. R package version 1.5.12, https://cran.r-project.org/web/packages/iCAMP. Accessed 05 Mar. 2026.
Previous versions and publish date:
1.2.8 (2020-09-09 11:50), 1.2.9 (2020-09-19 23:10), 1.3.4 (2021-01-09 07:30)
Other packages that cited iCAMP R package
View iCAMP citation profile
Other R packages that iCAMP depends, imports, suggests or enhances
Complete documentation for iCAMP
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

diffIRT  
Diffusion IRT Models for Response and Response Time Data
Package to fit diffusion-based IRT models to response and response time data. Models are fit using ...
Download / Learn more Package Citations See dependency  
pinp  
'pinp' is not 'PNAS'
A 'PNAS'-alike style for 'rmarkdown', derived from the 'Proceedings of the National Academy of Scie ...
Download / Learn more Package Citations See dependency  
imagefx  
Extract Features from Images
Synthesize images into characteristic features for time-series analysis or machine learning applicat ...
Download / Learn more Package Citations See dependency  
neat  
Efficient Network Enrichment Analysis Test
Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
roccv  
ROC for Cross Validation Results
Cross validate large genetic data while specifying clinical variables that should always be in the m ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA