R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
hsrecombi
View on CRAN: Click
here
Download and install hsrecombi package within the R console
Install from CRAN:
install.packages("hsrecombi")
Install from Github:
library("remotes")
install_github("cran/hsrecombi") Install by package version:
library("remotes")
install_version("hsrecombi", "1.0.1") Attach the package and use:
library("hsrecombi")
Maintained by
Dörte Wittenburg
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-04
Latest Update: 2023-06-07
Description:
Paternal recombination rate and maternal linkage disequilibrium
(LD) are estimated for pairs of biallelic markers such as single nucleotide
polymorphisms (SNPs) from progeny genotypes and sire haplotypes. The
implementation relies on paternal half-sib families. If maternal half-sib
families are used, the roles of sire/dam are swapped. Multiple families can
be considered. For parameter estimation, at least one sire has to be double
heterozygous at the investigated pairs of SNPs.
Based on recombination rates, genetic distances between markers can be
estimated. Markers with unusually large recombination rate to markers in
close proximity (i.e. putatively misplaced markers) shall be discarded in
this derivation.
A workflow description is attached as vignette.
*A pipeline is available at GitHub*
Hampel, Teuscher, Gomez-Raya, Doschoris, Wittenburg (2018) "Estimation of
recombination rate and maternal linkage disequilibrium in half-sibs"
.
Gomez-Raya (2012) "Maximum likelihood estimation of linkage disequilibrium
in half-sib families" .
How to cite:
Dörte Wittenburg (2020). hsrecombi: Estimation of Recombination Rate and Maternal LD in Half-Sibs. R package version 1.0.1, https://cran.r-project.org/web/packages/hsrecombi. Accessed 06 Mar. 2026.
Previous versions and publish date:
Other packages that cited hsrecombi R package
View hsrecombi citation profile
Other R packages that hsrecombi depends,
imports, suggests or enhances
Complete documentation for hsrecombi
Functions, R codes and Examples using
the hsrecombi R package
Some associated functions: LDHScpp . bestmapfun . checkCandidates . countNumbers . daughterSire . editraw . felsenstein . geneticPosition . genotype.chr . haldane . hapSire . hsrecombi . karlin . kosambi . loglikfun . makehap . makehaplist . makehappm . map.chr . rao-inverse . rao . startvalue . targetregion .
Some associated R codes: RcppExports.R . daughterSire.R . functions.R . genotype.chr.R . hapSire.R . hsrecombi.R . map.chr.R . targetregion.R . Full hsrecombi package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
EMVS
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Gemma Moran (view profile)
solitude
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Komala Sheshachala Srikanth (view profile)
openxlsx
Simplifies the creation of Excel .xlsx files by providing a
high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jan Marvin Garbuszus (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
lbfgs
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Antonio Coppola (view profile)
DatabionicSwarm
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Michael Thrun (view profile)
26,264
R Packages
223,360
Dependencies
70,244
Author Associations
26,265
Publication Badges
