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hsphase  

Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
View on CRAN: Click here


Download and install hsphase package within the R console
Install from CRAN:
install.packages("hsphase")

Install from Github:
library("remotes")
install_github("cran/hsphase")

Install by package version:
library("remotes")
install_version("hsphase", "2.0.4")



Attach the package and use:
library("hsphase")
Maintained by
Mohammad Ferdosi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-10-26
Latest Update: 2025-04-06
Description:
Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.
How to cite:
Mohammad Ferdosi (2013). hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data. R package version 2.0.4, https://cran.r-project.org/web/packages/hsphase. Accessed 10 Mar. 2026.
Previous versions and publish date:
1.2.3 (2013-10-26 07:44), 1.2.4 (2013-10-30 14:18), 1.2.5 (2014-03-28 13:03), 1.2.6 (2014-04-02 11:39), 2.0.0 (2014-06-27 06:58), 2.0.1 (2016-12-05 18:28), 2.0.2 (2018-11-26 06:40), 2.0.3 (2024-02-16 12:40), 2.0.4 (2025-04-06 05:00)
Other packages that cited hsphase R package
View hsphase citation profile
Other R packages that hsphase depends, imports, suggests or enhances
Complete documentation for hsphase
Functions, R codes and Examples using the hsphase R package
Some associated functions: aio . bmh . co . cs . genotypes . hbp . hh . hsphase-package . hss . imageplot . impute . map . ohd . ohg . ohplot . para . pedigree . pedigreeNaming . phf . pm . pogc . readGenotype . recombinations . rplot . rpoh . ssp . 
Some associated R codes: aio.R . bmh.R . co.R . cs.R . fastDist.R . hh.R . hsphase.R . hss.R . imageplot.R . impute.R . maf.R . namingInferedPedigree.R . ohd.R . ohg.R . ohplot.R . para.R . pogc.R . prCalus.R . prManual.R . prSimple.R . rplot.R . rpoh.R . rpohhsphase.R . simulateHalfsib.R . ssp.R .  Full hsphase package functions and examples
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