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hlaR
View on CRAN: Click
here
Download and install hlaR package within the R console
Install from CRAN:
install.packages("hlaR")
Install from Github:
library("remotes")
install_github("cran/hlaR") Install by package version:
library("remotes")
install_version("hlaR", "1.0.0") Attach the package and use:
library("hlaR")
Maintained by
Joan Zhang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-13
Latest Update: 2023-01-31
Description:
A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database . High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.
How to cite:
Joan Zhang (2021). hlaR: Tools for HLA Data. R package version 1.0.0, https://cran.r-project.org/web/packages/hlaR. Accessed 25 Aug. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for hlaR
Functions, R codes and Examples using
the hlaR R package
Some associated functions: CalAlleleMismFreq . CalAlleleTopN . CalEpletMHCI . CalEpletMHCII . CleanAllele . CountAlleleMism . EvalAlleleMism . ImputeHaplo . utils .
Some associated R codes: allele-clean.R . allele-count-mism.R . allele-eval-mism.R . allele-haplotype.R . allele-mism-freq.R . allele-topn.R . eplet-MHC-I.R . eplet-MHC-II.R . globals.R . utils.R . Full hlaR package functions and examples
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