Other packages > Find by keyword >

hilldiv  

Integral Analysis of Diversity Based on Hill Numbers
View on CRAN: Click here


Download and install hilldiv package within the R console
Install from CRAN:
install.packages("hilldiv")

Install from Github:
library("remotes")
install_github("cran/hilldiv")

Install by package version:
library("remotes")
install_version("hilldiv", "1.5.1")



Attach the package and use:
library("hilldiv")
Maintained by
Antton Alberdi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-01
Latest Update:
Description:
Tools for analysing, comparing, visualising and partitioning diversity based on Hill numbers. 'hilldiv' is an R package that provides a set of functions to assist analysis of diversity for diet reconstruction, microbial community profiling or more general ecosystem characterisation analyses based on Hill numbers, using OTU/ASV tables and associated phylogenetic trees as inputs. The package includes functions for (phylo)diversity measurement, (phylo)diversity profile plotting, (phylo)diversity comparison between samples and groups, (phylo)diversity partitioning and (dis)similarity measurement. All of these grounded in abundance-based and incidence-based Hill numbers. The statistical framework developed around Hill numbers encompasses many of the most broadly employed diversity (e.g. richness, Shannon index, Simpson index), phylogenetic diversity (e.g. Faith's PD, Allen's H, Rao's quadratic entropy) and dissimilarity (e.g. Sorensen index, Unifrac distances) metrics. This enables the most common analyses of diversity to be performed while grounded in a single statistical framework. The methods are described in Jost et al. (2007) , Chao et al. (2010) and Chiu et al. (2014) ; and reviewed in the framework of molecularly characterised biological systems in Alberdi & Gilbert (2019) .
How to cite:
Antton Alberdi (2019). hilldiv: Integral Analysis of Diversity Based on Hill Numbers. R package version 1.5.1, https://cran.r-project.org/web/packages/hilldiv. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.5.1 (2019-10-01 16:40)
Other packages that cited hilldiv R package
View hilldiv citation profile
Other R packages that hilldiv depends, imports, suggests or enhances
Complete documentation for hilldiv
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA