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hierfstat
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Download and install hierfstat package within the R console
Install from CRAN:
install.packages("hierfstat")
Install from Github:
library("remotes")
install_github("cran/hierfstat")
Install by package version:
library("remotes")
install_version("hierfstat", "0.5-11")
Attach the package and use:
library("hierfstat")
Maintained by
Jerome Goudet
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2004-08-14
Latest Update: 2022-05-05
Description:
Estimates hierarchical F-statistics from haploid or
diploid genetic data with any numbers of levels in the hierarchy, following the
algorithm of Yang (Evolution(1998), 52:950).
Tests via randomisations the significance
of each F and variance components, using the likelihood-ratio statistics G
(Goudet et al. (1996) ).
Estimates genetic diversity statistics
for haploid and diploid genetic datasets in various formats, including inbreeding and
coancestry coefficients, and population specific F-statistics following
Weir and Goudet (2017) .
How to cite:
Jerome Goudet (2004). hierfstat: Estimation and Tests of Hierarchical F-Statistics. R package version 0.5-11, https://cran.r-project.org/web/packages/hierfstat. Accessed 30 Jan. 2025.
Previous versions and publish date:
0.01-4 (2004-08-14 18:11), 0.02-2 (2005-01-14 18:59), 0.03-1 (2005-03-03 17:44), 0.03-3 (2005-03-15 10:47), 0.04-1 (2005-06-07 11:03), 0.04-2 (2005-12-14 15:53), 0.04-3 (2006-07-10 08:04), 0.04-4 (2006-09-21 17:37), 0.04-6 (2011-11-24 09:20), 0.04-10 (2013-04-10 18:21), 0.04-14 (2014-09-29 18:30), 0.04-22 (2015-12-04 15:57), 0.5-7 (2020-07-20 20:20), 0.5-10 (2021-11-17 14:40)
Other packages that cited hierfstat R package
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Other R packages that hierfstat depends,
imports, suggests or enhances
Complete documentation for hierfstat
Functions, R codes and Examples using
the hierfstat R package
Some associated functions: AIc . TajimaD.dosage . basic.stats . beta.dosage . betas . biall2dos . boot.ppbetas . boot.vc . cont.isl . cont.isl99 . crocrussula . diploid . exhier . fs.dosage . fstat2dos . g.stats.glob . g.stats . genet.dist . genind2hierfstat . genot2al . getal.b . getal . grm2kinship . gtrunchier . hierfstat . ind.count . kinship2dist . kinship2grm . kinshipShift . mat2vec . matching . ms2bed . ms2dos . pairwise.WCfst . pairwise.betas . pairwise.neifst . pi.dosage . pop.freq . qn2.read.fstat . read.VCF . read.fstat.data . read.ms . samp.between . samp.between.within . samp.within . sexbias.test . sim.genot.metapop.t . sim.genot.t . test.between . test.between.within . test.g . test.within . theta.Watt.dosage . varcomp.glob . varcomp . vec2mat . write.bayescan . write.ped . yangex .
Some associated R codes: beta_dosage.R . betas.R . boot.R . data.R . div_dosage.R . fsdosage.R . fstat2dos.R . genepop-misc.R . genetdist.R . genind2hierfstat.R . indpca.R . ksGRM.R . mat2vec.R . misc.R . nwc.R . pairwise.fst.R . ppboot.R . readQN.R . readVCF.R . readmsb.R . sexbiaseddisp.R . simgenot_new.R . test.hier.R . varcomp.R . vec2mat.R . writebayescan.R . writefstat.R . writeped.R . Full hierfstat package functions and examples
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