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hibayes
View on CRAN: Click
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Download and install hibayes package within the R console
Install from CRAN:
install.packages("hibayes")
Install from Github:
library("remotes")
install_github("cran/hibayes")
Install by package version:
library("remotes")
install_version("hibayes", "3.0.3")
Attach the package and use:
library("hibayes")
Maintained by
Lilin Yin
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-12-10
Latest Update: 2023-09-01
Description:
A user-friendly tool to fit Bayesian regression models. It can fit 3 types of Bayesian models using individual-level, summary-level, and individual plus pedigree-level (single-step) data for both Genomic prediction/selection (GS) and Genome-Wide Association Study (GWAS), it was designed to estimate joint effects and genetic parameters for a complex trait, including:
(1) fixed effects and coefficients of covariates,
(2) environmental random effects, and its corresponding variance,
(3) genetic variance,
(4) residual variance,
(5) heritability,
(6) genomic estimated breeding values (GEBV) for both genotyped and non-genotyped individuals,
(7) SNP effect size,
(8) phenotype/genetic variance explained (PVE) for single or multiple SNPs,
(9) posterior probability of association of the genomic window (WPPA),
(10) posterior inclusive probability (PIP).
The functions are not limited, we will keep on going in enriching it with more features.
References: Meuwissen et al. (2001) ; Gustavo et al. (2013) ; Habier et al. (2011) ; Yi et al. (2008) ; Zhou et al. (2013) ; Moser et al. (2015) ; Lloyd-Jones et al. (2019) ; Henderson (1976) ; Fernando et al. (2014) .
How to cite:
Lilin Yin (2021). hibayes: Individual-Level, Summary-Level and Single-Step Bayesian Regression Model. R package version 3.0.3, https://cran.r-project.org/web/packages/hibayes
Previous versions and publish date:
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Other R packages that hibayes depends,
imports, suggests or enhances
Functions, R codes and Examples using
the hibayes R package
Some associated functions: bayes . ldmat . read_plink . reexports . sbayes . ssbayes .
Some associated R codes: RcppExports.R . exports.R . zzz.R . Full hibayes package functions and examples
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