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hdmed
View on CRAN: Click
here
Download and install hdmed package within the R console
Install from CRAN:
install.packages("hdmed")
Install from Github:
library("remotes")
install_github("cran/hdmed")
Install by package version:
library("remotes")
install_version("hdmed", "1.0.1")
Attach the package and use:
library("hdmed")
Maintained by
Dylan Clark-Boucher
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-02-27
Latest Update: 2023-02-27
Description:
A suite of functions for performing mediation
analysis with high-dimensional mediators. In addition to centralizing code
from several existing packages for high-dimensional mediation analysis, we
provide organized, well-documented functions for a handle of methods
which, though programmed their original authors, have not previously been
formalized into R packages or been made presentable for public use. The
methods we include cover a broad array of approaches and objectives, and are
described in detail by both our companion manuscript---"Methods for
Mediation Analysis with High-Dimensional DNA Methylation Data: Possible
Choices and Comparison"---and the original publications that proposed them.
The specific methods offered by our package include the Bayesian sparse
linear mixed model (BSLMM) by Song et al. (2019); high-dimensional mediation
analysis (HDMA) by Gao et al. (2019); high-dimensional multivariate
mediation (HDMM) by Ch
How to cite:
Dylan Clark-Boucher (2023). hdmed: Methods for Mediation Analysis with High-Dimensional Mediators. R package version 1.0.1, https://cran.r-project.org/web/packages/hdmed. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.0 (2023-02-27 09:42)
Other packages that cited hdmed R package
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Other R packages that hdmed depends,
imports, suggests or enhances
Complete documentation for hdmed
Functions, R codes and Examples using
the hdmed R package
Some associated functions: med_dat . mediate_bslmm . mediate_hdma . mediate_hdmm . mediate_hilma . mediate_hima . mediate_lvma . mediate_medfix . mediate_pcma . mediate_plasso . mediate_spcma .
Some associated R codes: bslmm.R . data.R . hdma.R . hdmm.R . hdmm_utils.R . hilma.R . hilma_utils.R . hima.R . hima_hdma_utils.R . lvma.R . lvma_utils.R . medfix.R . medfix_utils.R . pathway_lasso.R . pathway_lasso_utils.R . pcma.R . spcma.R . spcma_utils.R . Full hdmed package functions and examples
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