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harmony  

Fast, Sensitive, and Accurate Integration of Single Cell Data
View on CRAN: Click here


Download and install harmony package within the R console
Install from CRAN:
install.packages("harmony")

Install from Github:
library("remotes")
install_github("cran/harmony")

Install by package version:
library("remotes")
install_version("harmony", "1.2.4")



Attach the package and use:
library("harmony")
Maintained by
Ilya Korsunsky
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-02
Latest Update: 2024-11-27
Description:
Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al . Package includes a standalone Harmony function and interfaces to external frameworks.
How to cite:
Ilya Korsunsky (2021). harmony: Fast, Sensitive, and Accurate Integration of Single Cell Data. R package version 1.2.4, https://cran.r-project.org/web/packages/harmony. Accessed 27 Jun. 2026.
Previous versions and publish date:
0.1.0 (2021-06-02 10:10), 0.1.1 (2022-11-14 10:20), 1.0.1 (2023-09-20 15:30), 1.0.3 (2023-10-01 01:00), 1.1.0 (2023-10-23 21:50), 1.2.0 (2023-11-29 09:30), 1.2.1 (2024-08-28 00:10), 1.2.3 (2024-11-28 00:50), 1.2.4 (2025-10-10 07:30), 2.0.2 (2026-04-25 08:40), 2.0.3 (2026-05-13 18:20), 2.0.4 (2026-06-04 08:40)
Other packages that cited harmony R package
View harmony citation profile
Other R packages that harmony depends, imports, suggests or enhances
Complete documentation for harmony
Functions, R codes and Examples using the harmony R package
Some associated functions: HarmonyMatrix . RunHarmony.Seurat . RunHarmony.SingleCellExperiment . RunHarmony.default . RunHarmony . cell_lines . cell_lines_small . harmony . harmony_options . moe_ridge_get_betas . pbmc.ctrl . pbmc.stim . pipe . 
Some associated R codes: RcppExports.R . RunHarmony.R . data.R . harmony_option.R . ui.R . utils.R .  Full harmony package functions and examples
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