Other packages > Find by keyword >

haplotypes  

Manipulating DNA Sequences and Estimating Unambiguous Haplotype Network with Statistical Parsimony
View on CRAN: Click here


Download and install haplotypes package within the R console
Install from CRAN:
install.packages("haplotypes")

Install from Github:
library("remotes")
install_github("cran/haplotypes")

Install by package version:
library("remotes")
install_version("haplotypes", "1.1.3.2")



Attach the package and use:
library("haplotypes")
Maintained by
Caner Aktas
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-04-26
Latest Update: 2025-09-03
Description:
Provides S4 classes and methods for reading and manipulating aligned DNA sequences, supporting an indel coding methods (only simple indel coding method is available in the current version), showing base substitutions and indels, calculating absolute pairwise distances between DNA sequences, and collapses identical DNA sequences into haplotypes or inferring haplotypes using user provided absolute pairwise character difference matrix. This package also includes S4 classes and methods for estimating genealogical relationships among haplotypes using statistical parsimony and plotting parsimony networks.
How to cite:
Caner Aktas (2015). haplotypes: Manipulating DNA Sequences and Estimating Unambiguous Haplotype Network with Statistical Parsimony. R package version 1.1.3.2, https://cran.r-project.org/web/packages/haplotypes. Accessed 05 Jun. 2026.
Previous versions and publish date:
1.0 (2015-04-26 09:49), 1.1.1 (2020-02-20 23:20), 1.1.2 (2020-02-28 14:50), 1.1.3.1 (2023-07-15 07:40), 1.1.3 (2023-06-29 19:10), 1.1 (2019-03-16 23:50)
Other packages that cited haplotypes R package
View haplotypes citation profile
Other R packages that haplotypes depends, imports, suggests or enhances
Complete documentation for haplotypes
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA