Other packages > Find by keyword >

haplotyper  

Tool for Clustering Genotypes in Haplotypes
View on CRAN: Click here


Download and install haplotyper package within the R console
Install from CRAN:
install.packages("haplotyper")

Install from Github:
library("remotes")
install_github("cran/haplotyper")

Install by package version:
library("remotes")
install_version("haplotyper", "0.1")



Attach the package and use:
library("haplotyper")
Maintained by
Gaston Quero
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-04-06
Latest Update: 2016-04-06
Description:
Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.
How to cite:
Gaston Quero (2016). haplotyper: Tool for Clustering Genotypes in Haplotypes. R package version 0.1, https://cran.r-project.org/web/packages/haplotyper. Accessed 07 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited haplotyper R package
View haplotyper citation profile
Other R packages that haplotyper depends, imports, suggests or enhances
Complete documentation for haplotyper
Functions, R codes and Examples using the haplotyper R package
Some associated functions: haplotyper . rice_qtl . sim_qtl . 
Some associated R codes: haplotyper.R . rice_qtl.R . sim_qtl.R .  Full haplotyper package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

xmlr  
Read, Write and Work with 'XML' Data
'XML' package for creating and reading and manipulating 'XML', with an object model based on 'Refere ...
Download / Learn more Package Citations See dependency  
curtailment  
Finds Binary Outcome Designs Using Stochastic Curtailment
Finds single- and two-arm designs using stochastic curtailment, as described by Law et al. (2022) ...
Download / Learn more Package Citations See dependency  
embryogrowth  
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See ...
Download / Learn more Package Citations See dependency  
keep  
Arrays with Better Control over Dimension Dropping
Provides arrays with flexible control over dimension dropping when subscripting. ...
Download / Learn more Package Citations See dependency  
roxygen2  
In-Line Documentation for R
Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted com ...
Download / Learn more Package Citations See dependency  
gRain  
Bayesian Networks
Probability propagation in graphical independence networks, also known as Bayesian networks or prob ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA