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haplotyper  

Tool for Clustering Genotypes in Haplotypes
View on CRAN: Click here


Download and install haplotyper package within the R console
Install from CRAN:
install.packages("haplotyper")

Install from Github:
library("remotes")
install_github("cran/haplotyper")

Install by package version:
library("remotes")
install_version("haplotyper", "0.1")



Attach the package and use:
library("haplotyper")
Maintained by
Gaston Quero
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-04-06
Latest Update: 2016-04-06
Description:
Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.
How to cite:
Gaston Quero (2016). haplotyper: Tool for Clustering Genotypes in Haplotypes. R package version 0.1, https://cran.r-project.org/web/packages/haplotyper. Accessed 28 Aug. 2026.
Previous versions and publish date:
No previous versions
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Complete documentation for haplotyper
Functions, R codes and Examples using the haplotyper R package
Some associated functions: haplotyper . rice_qtl . sim_qtl . 
Some associated R codes: haplotyper.R . rice_qtl.R . sim_qtl.R .  Full haplotyper package functions and examples
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