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hapassoc  

Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm
View on CRAN: Click here


Download and install hapassoc package within the R console
Install from CRAN:
install.packages("hapassoc")

Install from Github:
library("remotes")
install_github("cran/hapassoc")

Install by package version:
library("remotes")
install_version("hapassoc", "1.2-9")



Attach the package and use:
library("hapassoc")
Maintained by
K. Burkett
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2004-01-28
Latest Update: 2022-05-25
Description:
The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.
How to cite:
K. Burkett (2004). hapassoc: Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm. R package version 1.2-9, https://cran.r-project.org/web/packages/hapassoc. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1 (2004-01-28 20:09), 0.2 (2004-03-26 08:51), 0.3 (2004-04-14 09:20), 0.4-1 (2004-08-27 13:44), 0.4 (2004-08-04 19:19), 0.5-1 (2004-11-04 16:44), 0.5 (2004-09-30 09:42), 0.6-2 (2005-06-10 09:20), 0.6 (2005-04-14 09:39), 0.7 (2005-07-01 09:31), 1.0-1 (2006-04-29 13:09), 1.0 (2006-04-13 10:29), 1.1-1 (2007-09-23 21:54), 1.1 (2006-09-29 12:53), 1.2-1 (2008-07-29 14:09), 1.2-2 (2008-10-14 21:50), 1.2-3 (2009-11-25 09:29), 1.2-4 (2010-07-08 21:43), 1.2-5 (2012-04-05 22:47), 1.2-6 (2012-09-22 22:02), 1.2-7 (2014-08-25 20:19), 1.2-8 (2015-05-11 00:22), 1.2 (2008-07-20 11:09)
Other packages that cited hapassoc R package
View hapassoc citation profile
Other R packages that hapassoc depends, imports, suggests or enhances
Complete documentation for hapassoc
Functions, R codes and Examples using the hapassoc R package
Some associated functions: PreHap . anova_hapassoc . hapassoc . hypoDat . hypoDatGeno . logLik_hapassoc . summaryHap . 
Some associated R codes: PreHap.R . RecodeHaplos.R . hapassoc.R . logLik_hapassoc.R . summaryHap.R . zzz.R .  Full hapassoc package functions and examples
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