Other packages > Find by keyword >

growthPheno  

Functional Analysis of Phenotypic Growth Data to Smooth and Extract Traits
View on CRAN: Click here


Download and install growthPheno package within the R console
Install from CRAN:
install.packages("growthPheno")

Install from Github:
library("remotes")
install_github("cran/growthPheno")

Install by package version:
library("remotes")
install_version("growthPheno", "2.1.25")



Attach the package and use:
library("growthPheno")
Maintained by
Chris Brien
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-05-14
Latest Update: 2024-02-29
Description:
Assists in the plotting and functional smoothing of traits measured over time and the extraction of features from these traits, implementing the SET (Smoothing and Extraction of Traits) method described in Brien et al. (2020) Plant Methods, 16. Smoothing of growth trends for individual plants using natural cubic smoothing splines or P-splines is available for removing transient effects and segmented smoothing is available to deal with discontinuities in growth trends. There are graphical tools for assessing the adequacy of trait smoothing, both when using this and other packages, such as those that fit nonlinear growth models. A range of per-unit (plant, pot, plot) growth traits or features can be extracted from the data, including single time points, interval growth rates and other growth statistics, such as maximum growth or days to maximum growth. The package also has tools adapted to inputting data from high-throughput phenotyping facilities, such from a Lemna-Tec Scananalyzer 3D (see for more information). The package 'growthPheno' can also be installed from .
How to cite:
Chris Brien (2019). growthPheno: Functional Analysis of Phenotypic Growth Data to Smooth and Extract Traits. R package version 2.1.25, https://cran.r-project.org/web/packages/growthPheno. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0-13 (2019-05-14 16:20), 1.0-15 (2019-07-15 10:10), 1.0-21 (2020-01-12 15:40), 1.0-22 (2020-03-18 07:10), 1.0-26 (2020-07-09 15:00), 1.0-30 (2020-12-12 09:20), 1.0-34 (2021-10-14 12:30), 2.1.16 (2022-11-15 19:30), 2.1.17 (2023-01-13 23:40), 2.1.19 (2023-03-15 06:00), 2.1.21 (2023-08-22 18:00), 2.1.23 (2023-10-24 15:40), 2.1.24 (2024-02-29 05:30)
Other packages that cited growthPheno R package
View growthPheno citation profile
Other R packages that growthPheno depends, imports, suggests or enhances
Complete documentation for growthPheno
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  
RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA