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gprofiler2  

Interface to the 'g:Profiler' Toolset
View on CRAN: Click here


Download and install gprofiler2 package within the R console
Install from CRAN:
install.packages("gprofiler2")

Install from Github:
library("remotes")
install_github("cran/gprofiler2")

Install by package version:
library("remotes")
install_version("gprofiler2", "0.2.3")



Attach the package and use:
library("gprofiler2")
Maintained by
Liis Kolberg
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-03-06
Latest Update: 2024-02-23
Description:
A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.
How to cite:
Liis Kolberg (2019). gprofiler2: Interface to the 'g:Profiler' Toolset. R package version 0.2.3, https://cran.r-project.org/web/packages/gprofiler2. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1.0 (2019-03-06 20:30), 0.1.1 (2019-03-25 20:20), 0.1.2 (2019-04-08 12:20), 0.1.3 (2019-04-23 17:30), 0.1.4 (2019-05-24 14:00), 0.1.5 (2019-07-04 11:00), 0.1.6 (2019-08-26 15:40), 0.1.7 (2019-10-31 18:50), 0.1.8 (2019-12-18 14:40), 0.1.9 (2020-04-23 20:00), 0.2.0 (2020-08-27 15:50), 0.2.1 (2021-08-23 16:00), 0.2.2 (2023-06-14 04:50)
Other packages that cited gprofiler2 R package
View gprofiler2 citation profile
Other R packages that gprofiler2 depends, imports, suggests or enhances
Complete documentation for gprofiler2
Functions, R codes and Examples using the gprofiler2 R package
Some associated functions: gconvert . get_base_url . get_tls_version . get_user_agent . get_version_info . gorth . gost . gostplot . gsnpense . mapViridis . publish_gostplot . publish_gosttable . random_query . set_base_url . set_tls_version . set_user_agent . upload_GMT_file . 
Some associated R codes: gprofiler2.R .  Full gprofiler2 package functions and examples
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