Other packages > Find by keyword >

gimap  

Calculate Genetic Interactions for Paired CRISPR Targets
View on CRAN: Click here


Download and install gimap package within the R console
Install from CRAN:
install.packages("gimap")

Install from Github:
library("remotes")
install_github("cran/gimap")

Install by package version:
library("remotes")
install_version("gimap", "1.0.3")



Attach the package and use:
library("gimap")
Maintained by
Candace Savonen
[Scholar Profile | Author Map]
First Published: 2025-02-18
Latest Update: 2025-02-18
Description:
Helps find meaningful patterns in complex genetic experiments. First gimap takes data from paired CRISPR (Clustered regularly interspaced short palindromic repeats) screens that has been pre-processed to counts table of paired gRNA (guide Ribonucleic Acid) reads. The input data will have cell counts for how well cells grow (or don't grow) when different genes or pairs of genes are disabled. The output of the 'gimap' package is genetic interaction scores which arethe distance between the observed CRISPR score and the expected CRISPR score. The expected CRISPR scores are what we expect for the CRISPR values to be for two unrelated genes. The further away an observed CRISPR score is from its expected score the more we suspect genetic interaction. The work in this package is based off of original research from the Alice Berger lab at Fred Hutchinson Cancer Center (2021) <doi:10.1016/j.celrep.2021.109597>.
How to cite:
Candace Savonen (2025). gimap: Calculate Genetic Interactions for Paired CRISPR Targets. R package version 1.0.3, https://cran.r-project.org/web/packages/gimap. Accessed 29 Mar. 2025.
Previous versions and publish date:
1.0.1 (2025-02-03 12:50), 1.0.2 (2025-02-19 00:40)
Other packages that cited gimap R package
View gimap citation profile
Other R packages that gimap depends, imports, suggests or enhances
Complete documentation for gimap
Functions, R codes and Examples using the gimap R package
Full gimap package functions and examples
Downloads during the last 30 days
02/2702/2803/0103/0203/0303/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/27Downloads for gimap0510152025303540455055TrendBars

Today's Hot Picks in Authors and Packages

gglgbtq  
Show Pride on 'ggplot2' Plots
Provides multiple palettes based on pride flags with tailored themes. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
landmix  
Landmark Prediction for Mixture Data
Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a l ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA