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ggrasp
View on CRAN: Click
here
Download and install ggrasp package within the R console
Install from CRAN:
install.packages("ggrasp")
Install from Github:
library("remotes")
install_github("cran/ggrasp") Install by package version:
library("remotes")
install_version("ggrasp", "1.2") Attach the package and use:
library("ggrasp")
Maintained by
Thomas Clarke
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-01
Latest Update: 2022-04-21
Description:
Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, .
How to cite:
Thomas Clarke (2018). ggrasp: Gaussian-Based Genome Representative Selector with Prioritization. R package version 1.2, https://cran.r-project.org/web/packages/ggrasp. Accessed 08 Oct. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for ggrasp
Functions, R codes and Examples using
the ggrasp R package
Some associated functions: ggrasp-class . ggrasp.addRanks . ggrasp.cluster . ggrasp.load . ggrasp.recluster . ggrasp.write . plot.ggrasp . print.ggrasp . summary.ggrasp .
Some associated R codes: ggrasp.cluster.R . ggrasp.create.R . utils.R . Full ggrasp package functions and examples
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