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ggrasp  

Gaussian-Based Genome Representative Selector with Prioritization
View on CRAN: Click here


Download and install ggrasp package within the R console
Install from CRAN:
install.packages("ggrasp")

Install from Github:
library("remotes")
install_github("cran/ggrasp")

Install by package version:
library("remotes")
install_version("ggrasp", "1.2")



Attach the package and use:
library("ggrasp")
Maintained by
Thomas Clarke
[Scholar Profile | Author Map]
First Published: 2018-07-01
Latest Update: 2022-04-21
Description:
Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, .
How to cite:
Thomas Clarke (2018). ggrasp: Gaussian-Based Genome Representative Selector with Prioritization. R package version 1.2, https://cran.r-project.org/web/packages/ggrasp. Accessed 13 Apr. 2025.
Previous versions and publish date:
1.0 (2018-07-01 15:30)
Other packages that cited ggrasp R package
View ggrasp citation profile
Other R packages that ggrasp depends, imports, suggests or enhances
Complete documentation for ggrasp
Functions, R codes and Examples using the ggrasp R package
Some associated functions: ggrasp-class . ggrasp.addRanks . ggrasp.cluster . ggrasp.load . ggrasp.recluster . ggrasp.write . plot.ggrasp . print.ggrasp . summary.ggrasp . 
Some associated R codes: ggrasp.cluster.R . ggrasp.create.R . utils.R .  Full ggrasp package functions and examples
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