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ggmotif  

Extract and Visualize Motif Information from MEME Software
View on CRAN: Click here


Download and install ggmotif package within the R console
Install from CRAN:
install.packages("ggmotif")

Install from Github:
library("remotes")
install_github("cran/ggmotif")

Install by package version:
library("remotes")
install_version("ggmotif", "0.2.1")



Attach the package and use:
library("ggmotif")
Maintained by
Xiang LI
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-09-20
Latest Update: 2023-12-12
Description:
Extract and visualize motif information from XML file from MEME software. In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread and usually assumed to be related to specifical biological functions. There exist many software was used to discover motif sequences from a set of nucleotide or amino acid sequences. MEME is almost the most used software to detect motif. It's difficult for biologists to extract and visualize the location of a motif on sequences from the results from MEME software.
How to cite:
Xiang LI (2021). ggmotif: Extract and Visualize Motif Information from MEME Software. R package version 0.2.1, https://cran.r-project.org/web/packages/ggmotif. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1.1 (2021-09-20 11:10), 0.1.3 (2022-06-19 12:40), 0.1.4 (2022-07-04 19:30), 0.2.0 (2022-08-08 18:20), 0.2.1 (2022-08-11 12:30)
Other packages that cited ggmotif R package
View ggmotif citation profile
Other R packages that ggmotif depends, imports, suggests or enhances
Functions, R codes and Examples using the ggmotif R package
Some associated functions: getMotifFromMEME . motifLocation . 
Some associated R codes: getMotifFromMEME.R . motifLocation.R .  Full ggmotif package functions and examples
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