Other packages > Find by keyword >

ggcoverage  

Visualize Genome Coverage with Various Annotations
View on CRAN: Click here


Download and install ggcoverage package within the R console
Install from CRAN:
install.packages("ggcoverage")

Install from Github:
library("remotes")
install_github("cran/ggcoverage")

Install by package version:
library("remotes")
install_version("ggcoverage", "0.7.1")



Attach the package and use:
library("ggcoverage")
Maintained by
Yabing Song
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-08-18
Latest Update: 2022-09-06
Description:
The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation.
How to cite:
Yabing Song (2022). ggcoverage: Visualize Genome Coverage with Various Annotations. R package version 0.7.1, https://cran.r-project.org/web/packages/ggcoverage. Accessed 28 Mar. 2025.
Previous versions and publish date:
0.7.0 (2022-08-18 09:20), 0.7.1 (2022-09-06 04:50)
Other packages that cited ggcoverage R package
View ggcoverage citation profile
Other R packages that ggcoverage depends, imports, suggests or enhances
Downloads during the last 30 days
02/2703/0503/1203/1403/1503/25Downloads for ggcoverage0.511.522.533.544.555.566.5TrendBars

Today's Hot Picks in Authors and Packages

transfR  
Transfer of Hydrograph from Gauged to Ungauged Catchments
A geomorphology-based hydrological modelling for transferring streamflow measurements from gauged to ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
rsvd  
Randomized Singular Value Decomposition
Low-rank matrix decompositions are fundamental tools and widely used for data analysis, dimension r ...
Download / Learn more Package Citations See dependency  
FuzzyResampling  
Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction ...
Download / Learn more Package Citations See dependency  
pleiotest  
Fast Sequential Pleiotropy Test
It performs a fast multi-trait genome-wide association analysis based on seemingly unrelated regress ...
Download / Learn more Package Citations See dependency  
hts  
Hierarchical and Grouped Time Series
Provides methods for analysing and forecasting hierarchical and grouped time series. The available ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA