Other packages > Find by keyword >

genieclust  

Fast and Robust Hierarchical Clustering with Noise Points Detection
View on CRAN: Click here


Download and install genieclust package within the R console
Install from CRAN:
install.packages("genieclust")

Install from Github:
library("remotes")
install_github("cran/genieclust")

Install by package version:
library("remotes")
install_version("genieclust", "1.1.6")



Attach the package and use:
library("genieclust")
Maintained by
Marek Gagolewski
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-30
Latest Update: 2023-10-18
Description:
A retake on the Genie algorithm (Gagolewski, 2021 ) - a robust hierarchical clustering method (Gagolewski, Bartoszuk, Cena, 2016 ). Now faster and more memory efficient; determining the whole hierarchy for datasets of 10M points in low dimensional Euclidean spaces or 100K points in high-dimensional ones takes only 1-2 minutes. Allows clustering with respect to mutual reachability distances so that it can act as a noise point detector or a robustified version of 'HDBSCAN*' (that is able to detect a predefined number of clusters and hence it does not dependent on the somewhat fragile 'eps' parameter). The package also features an implementation of inequality indices (the Gini, Bonferroni index), external cluster validity measures (e.g., the normalised clustering accuracy and partition similarity scores such as the adjusted Rand, Fowlkes-Mallows, adjusted mutual information, and the pair sets index), and internal cluster validity indices (e.g., the Calinski-Harabasz, Davies-Bouldin, Ball-Hall, Silhouette, and generalised Dunn indices). See also the 'Python' version of 'genieclust' available on 'PyPI', which supports sparse data, more metrics, and even larger datasets.
How to cite:
Marek Gagolewski (2020). genieclust: Fast and Robust Hierarchical Clustering with Noise Points Detection. R package version 1.1.6, https://cran.r-project.org/web/packages/genieclust. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.9.3 (2020-07-30 12:40), 0.9.4 (2020-08-01 03:10), 0.9.7 (2021-01-07 08:10), 0.9.8 (2021-01-08 11:30), 1.0.0 (2021-04-22 09:20), 1.0.1 (2022-08-08 13:40), 1.1.0 (2022-09-05 10:40), 1.1.3 (2023-01-17 01:40), 1.1.5-2 (2023-10-18 11:50)
Other packages that cited genieclust R package
View genieclust citation profile
Other R packages that genieclust depends, imports, suggests or enhances
Complete documentation for genieclust
Functions, R codes and Examples using the genieclust R package
Some associated functions: cluster_validity . compare_partitions . emst_mlpack . gclust . genieclust-package . inequality . mst . 
Some associated R codes: RcppExports.R . gclust.R . genieclust-package.R . mst.R .  Full genieclust package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA