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genieBPC
View on CRAN: Click
here
Download and install genieBPC package within the R console
Install from CRAN:
install.packages("genieBPC")
Install from Github:
library("remotes")
install_github("cran/genieBPC")
Install by package version:
library("remotes")
install_version("genieBPC", "1.1.1")
Attach the package and use:
library("genieBPC")
Maintained by
Jessica A. Lavery
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-08-14
Latest Update: 2023-03-03
Description:
The American Association Research (AACR) Project
Genomics Evidence Neoplasia Information Exchange (GENIE) BioPharma
Collaborative represents a multi-year, multi-institution effort
to build a pan-cancer repository of linked clinico-genomic data.
The genomic and clinical data are provided in multiple releases (separate
releases for each cancer cohort with updates following data corrections),
which are stored on the data sharing platform
'Synapse' .
The 'genieBPC' package provides a seamless way to obtain the
data corresponding to each release from 'Synapse' and to prepare
datasets for analysis.
How to cite:
Jessica A. Lavery (2022). genieBPC: Project GENIE BioPharma Collaborative Data Processing Pipeline. R package version 1.1.1, https://cran.r-project.org/web/packages/genieBPC
Previous versions and publish date:
Other packages that cited genieBPC R package
View genieBPC citation profile
Other R packages that genieBPC depends,
imports, suggests or enhances
Functions, R codes and Examples using
the genieBPC R package
Some associated functions: check_genie_access . create_analytic_cohort . dot-check_download_path . dot-get_and_query_file_url . dot-get_env . dot-get_synapse_token . dot-is_connected_to_genie . dot-pull_data_by_cohort . dot-resolve_duplicates . drug_regimen_list . drug_regimen_sunburst . genieBPC-package . genie_panels . nsclc_test_data . pull_data_synapse . regimen_abbreviations . select_unique_ngs . set_synapse_credentials . synapse_tables . synapse_version .
Some associated R codes: create_analytic_cohort.R . data.R . drug_regimen_sunburst.R . genieBPC-package.R . pull_data_synapse.R . select_unique_ngs.R . synapse_authentication.R . synapse_version.R . Full genieBPC package functions and examples
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