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geneset
View on CRAN: Click
here
Download and install geneset package within the R console
Install from CRAN:
install.packages("geneset")
Install from Github:
library("remotes")
install_github("cran/geneset")
Install by package version:
library("remotes")
install_version("geneset", "0.2.7")
Attach the package and use:
library("geneset")
Maintained by
Yunze Liu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-07-18
Latest Update: 2022-11-20
Description:
Gene sets are fundamental for gene enrichment analysis. The package 'geneset' enables querying
gene sets from public databases including 'GO' (Gene Ontology Consortium. (2004) ),
'KEGG' (Minoru et al. (2000) ),
'WikiPathway' (Marvin et al. (2020) ),
'MsigDb' (Arthur et al. (2015) ),
'Reactome' (David et al. (2011) ),
'MeSH' (Ish et al. (2014) ),
'DisGeNET' (Janet et al. (2017) ),
'Disease Ontology' (Lynn et al. (2011) ),
'Network of Cancer Genes' (Dimitra et al. (2019) ) and
'COVID-19' (Maxim et al. (2020) ).
Gene sets are stored in the list object which provides data frame of 'geneset' and 'geneset_name'.
The 'geneset' has two columns of term ID and gene ID. The 'geneset_name' has two columns of
terms ID and term description.
How to cite:
Yunze Liu (2022). geneset: Get Gene Sets for Gene Enrichment Analysis. R package version 0.2.7, https://cran.r-project.org/web/packages/geneset
Previous versions and publish date:
0.2.6 (2022-07-18 14:00)
Other packages that cited geneset R package
View geneset citation profile
Other R packages that geneset depends,
imports, suggests or enhances
Functions, R codes and Examples using
the geneset R package
Some associated functions: Datasets . getEnrichrdb . getGO . getHgDisease . getKEGG . getMesh . getMsigdb . getReactome . getWiki .
Some associated R codes: data.R . getEnrichrdb.R . getGO.R . getHgDisease.R . getKEGG.R . getMesh.R . getMsigdb.R . getReactome.R . getWiki.R . utilities.R . Full geneset package functions and examples
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