Other packages > Find by keyword >

geneHummus  

A Pipeline to Define Gene Families in Legumes and Beyond
View on CRAN: Click here


Download and install geneHummus package within the R console
Install from CRAN:
install.packages("geneHummus")

Install from Github:
library("remotes")
install_github("cran/geneHummus")

Install by package version:
library("remotes")
install_version("geneHummus", "1.0.11")



Attach the package and use:
library("geneHummus")
Maintained by
Jose V. Die
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-03-25
Latest Update: 2019-04-04
Description:
A pipeline with high specificity and sensitivity in extracting proteins from the RefSeq database (National Center for Biotechnology Information). Manual identification of gene families is highly time-consuming and laborious, requiring an iterative process of manual and computational analysis to identify members of a given family. The pipelines implements an automatic approach for the identification of gene families based on the conserved domains that specifically define that family. See Die et al. (2018) for more information and examples.
How to cite:
Jose V. Die (2019). geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond. R package version 1.0.11, https://cran.r-project.org/web/packages/geneHummus. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:41), 1.0.0 (2019-03-25 10:10), 1.0.1 (2019-03-26 16:20)
Other packages that cited geneHummus R package
View geneHummus citation profile
Other R packages that geneHummus depends, imports, suggests or enhances
Complete documentation for geneHummus
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA