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geneExpressionFromGEO
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Download and install geneExpressionFromGEO package within the R console
Install from CRAN:
install.packages("geneExpressionFromGEO")
Install from Github:
library("remotes")
install_github("cran/geneExpressionFromGEO")
Install by package version:
library("remotes")
install_version("geneExpressionFromGEO", "0.9")
Attach the package and use:
library("geneExpressionFromGEO")
Maintained by
Davide Chicco
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.geneExpressionFromGEO . https://github.com/davidechicco/geneExpressionFromGEO/issues . https://github.com/davidechicco/geneExpressionFromGEO . geneExpressionFromGEO results . geneExpressionFromGEO.pdf . geneExpressionFromGEOvignette . geneExpressionFromGEO_0.9.tar.gz . geneExpressionFromGEO_0.9.zip . geneExpressionFromGEO_0.9.zip . geneExpressionFromGEO_0.9.zip . geneExpressionFromGEO_0.9.tgz . geneExpressionFromGEO_0.9.tgz . geneExpressionFromGEO_0.9.tgz . geneExpressionFromGEO_0.9.tgz . geneExpressionFromGEO_0.9.tgz . geneExpressionFromGEO_0.9.tgz . geneExpressionFromGEO archive . https://CRAN.R-project.org/package=geneExpressionFromGEO .
First Published: 2020-11-16
Latest Update: 2021-12-16
Description:
A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optionally) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL . More information can be found in the following manuscript: Davide Chicco, "geneExpressionFromGEO: an R package to facilitate data reading from Gene Expression Omnibus (GEO)". Microarray Data Analysis, Methods in Molecular Biology, volume 2401, chapter 12, pages 187-194, Springer Protocols, 2021, .
How to cite:
Davide Chicco (2020). geneExpressionFromGEO: Easily Downloads a Gene Expression Dataset from a GEO Code and Retrieves the Gene Symbols of Its Probesets. R package version 0.9, https://cran.r-project.org/web/packages/geneExpressionFromGEO. Accessed 20 Feb. 2025.
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Complete documentation for geneExpressionFromGEO
Functions, R codes and Examples using
the geneExpressionFromGEO R package
Some associated functions: dec_two . getGeneExpressionFromGEO . readUrl .
Some associated R codes: Full geneExpressionFromGEO package functions and examples
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