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gen3sis
View on CRAN: Click
here
Download and install gen3sis package within the R console
Install from CRAN:
install.packages("gen3sis")
Install from Github:
library("remotes")
install_github("cran/gen3sis") Install by package version:
library("remotes")
install_version("gen3sis", "1.6.0") Attach the package and use:
library("gen3sis")
Maintained by
Oskar Hagen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-10
Latest Update: 2025-09-03
Description:
Contains an engine for spatially-explicit eco-evolutionary mechanistic models with a modular implementation and several support functions. It allows exploring the consequences of ecological and macroevolutionary processes across realistic or theoretical spatio-temporal landscapes on biodiversity patterns as a general term. Reference: Oskar Hagen, Benjamin Flueck, Fabian Fopp, Juliano S. Cabral, Florian Hartig, Mikael Pontarp, Thiago F. Rangel, Loic Pellissier (2021) "gen3sis: A general engine for eco-evolutionary simulations of the processes that shape Earth's biodiversity" .
How to cite:
Oskar Hagen (2020). gen3sis: General Engine for Eco-Evolutionary Simulations. R package version 1.6.0, https://cran.r-project.org/web/packages/gen3sis. Accessed 15 Jul. 2026.
Previous versions and publish date:
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Complete documentation for gen3sis
Functions, R codes and Examples using
the gen3sis R package
Some associated functions: apply_ecology . apply_evolution . color_richness . color_richness_non_CVDCBP . create_ancestor_species . create_input_config . create_input_landscape . create_species . evolution_mode_none . gen3sis . get_dispersal_values . get_divergence_factor . get_divergence_matrix . get_geo_richness . plot_landscape . plot_landscape_overview . plot_ranges . plot_raster_multiple . plot_raster_single . plot_richness . plot_species_abundance . plot_species_presence . plot_summary . prepare_directories . run_simulation . save_abundance . save_divergence . save_landscape . save_occupancy . save_phylogeny . save_richness . save_species . save_traits . skeleton_config . verify_config . write_config_skeleton .
Some associated R codes: RcppExports.R . config_handling.R . dispersal.R . divergence.R . ecology.R . evolution.R . gen3sis_landscape.R . gen3sis_main.R . gen3sis_species.R . input_creation.R . internal_functions.R . observations.R . plotting_functions.R . simulation.R . skeleton_config.R . skeleton_landscape_metadata.R . speciation.R . state_handling.R . summary_statistics.R . zzz.R . Full gen3sis package functions and examples
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