Other packages > Find by keyword >

gemma2  

GEMMA Multivariate Linear Mixed Model
View on CRAN: Click here


Download and install gemma2 package within the R console
Install from CRAN:
install.packages("gemma2")

Install from Github:
library("remotes")
install_github("cran/gemma2")

Install by package version:
library("remotes")
install_version("gemma2", "0.1.3")



Attach the package and use:
library("gemma2")
Maintained by
Frederick Boehm
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-01
Latest Update: 2020-10-24
Description:
Fits a multivariate linear mixed effects model that uses a polygenic term, after Zhou & Stephens (2014) (). Of particular interest is the estimation of variance components with restricted maximum likelihood (REML) methods. Genome-wide efficient mixed-model association (GEMMA), as implemented in the package 'gemma2', uses an expectation-maximization algorithm for variance components inference for use in quantitative trait locus studies.
How to cite:
Frederick Boehm (2019). gemma2: GEMMA Multivariate Linear Mixed Model. R package version 0.1.3, https://cran.r-project.org/web/packages/gemma2. Accessed 11 Jun. 2026.
Previous versions and publish date:
0.1.1 (2019-10-01 14:00)
Other packages that cited gemma2 R package
View gemma2 citation profile
Other R packages that gemma2 depends, imports, suggests or enhances
Complete documentation for gemma2
Functions, R codes and Examples using the gemma2 R package
Some associated functions: MphCalcLogL . MphEM . UpdateRL_B . calc_XHiY . calc_omega . calc_qi . calc_sigma . center_kinship . eigen2 . eigen_proc . gemma2 . stagger_mats . update_e . update_u . update_v . 
Some associated R codes: MphCalcLogL.R . MphEM.R . calc_XHiY.R . center_kinship.R . eigen2.R . stagger_mats.R . update_u.R .  Full gemma2 package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

leontief  
Input-Output Analysis
An implementation of the Input-Output model developed by Wassily Leontief that represents the inter ...
Download / Learn more Package Citations See dependency  
stevedata  
Steve's Toy Data for Teaching About a Variety of Methodological, Social, and Political Topics
This is a collection of various kinds of data with broad uses for teaching. My students, and academ ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
hsphase  
Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
Identification of recombination events, haplotype reconstruction, sire imputation and pedigree recon ...
Download / Learn more Package Citations See dependency  
Voss  
Generic Voss Algorithm (Random Sequential Additions)
Generating realizations of a fractal Brownian function on uniform 1D & 2D grid with classic and ...
Download / Learn more Package Citations See dependency  
clusrank  
Wilcoxon Rank Tests for Clustered Data
Non-parametric tests (Wilcoxon rank sum test and Wilcoxon signed rank test) for clustered data docu ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA