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gateR  

Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
View on CRAN: Click here


Download and install gateR package within the R console
Install from CRAN:
install.packages("gateR")

Install from Github:
library("remotes")
install_github("cran/gateR")

Install by package version:
library("remotes")
install_version("gateR", "0.1.15")



Attach the package and use:
library("gateR")
Maintained by
Ian D. Buller
[Scholar Profile | Author Map]
First Published: 2020-11-10
Latest Update: 2024-01-23
Description:
Estimates statistically significant marker combination values within which one immunologically distinctive group (i.e., disease case) is more associated than another group (i.e., healthy control), successively, using various combinations (i.e., "gates") of markers to examine features of cells that may be different between groups. For a two-group comparison, the 'gateR' package uses the spatial relative risk function estimated using the 'sparr' package. Details about the 'sparr' package methods can be found in the tutorial: Davies et al. (2018) . Details about kernel density estimation can be found in J. F. Bithell (1990) . More information about relative risk functions using kernel density estimation can be found in J. F. Bithell (1991) .
How to cite:
Ian D. Buller (2020). gateR: Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation. R package version 0.1.15, https://cran.r-project.org/web/packages/gateR. Accessed 20 Feb. 2025.
Previous versions and publish date:
0.1.2 (2020-11-10 16:20), 0.1.3 (2020-11-17 09:00), 0.1.4 (2020-11-30 19:20), 0.1.6 (2021-01-07 18:20), 0.1.7 (2021-02-04 18:40), 0.1.8 (2021-03-15 12:30), 0.1.9 (2021-06-26 01:00), 0.1.10 (2022-02-05 01:30), 0.1.11 (2022-08-27 00:14), 0.1.12 (2022-12-01 16:20), 0.1.13 (2023-02-02 00:30)
Other packages that cited gateR R package
View gateR citation profile
Other R packages that gateR depends, imports, suggests or enhances
Complete documentation for gateR
Functions, R codes and Examples using the gateR R package
Some associated functions: gateR-package . gating . lotrrs . lrr_plot . pval_correct . pval_plot . randCyto . rrs . 
Some associated R codes: gating.R . lotrrs.R . lrr_plot.R . package.R . pval_correct.R . pval_plot.R . randCyto.R . rrs.R . utils.R . zzz.R .  Full gateR package functions and examples
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