Other packages > Find by keyword >

gateR  

Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
View on CRAN: Click here


Download and install gateR package within the R console
Install from CRAN:
install.packages("gateR")

Install from Github:
library("remotes")
install_github("cran/gateR")

Install by package version:
library("remotes")
install_version("gateR", "0.1.16")



Attach the package and use:
library("gateR")
Maintained by
Ian D. Buller
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-10
Latest Update: 2025-09-03
Description:
Estimates statistically significant marker combination values within which one immunologically distinctive group (i.e., disease case) is more associated than another group (i.e., healthy control), successively, using various combinations (i.e., "gates") of markers to examine features of cells that may be different between groups. For a two-group comparison, the 'gateR' package uses the spatial relative risk function estimated using the 'sparr' package. Details about the 'sparr' package methods can be found in the tutorial: Davies et al. (2018) . Details about kernel density estimation can be found in J. F. Bithell (1990) . More information about relative risk functions using kernel density estimation can be found in J. F. Bithell (1991) .
How to cite:
Ian D. Buller (2020). gateR: Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation. R package version 0.1.16, https://cran.r-project.org/web/packages/gateR. Accessed 07 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:41), 0.1.2 (2020-11-10 16:20), 0.1.3 (2020-11-17 09:00), 0.1.4 (2020-11-30 19:20), 0.1.6 (2021-01-07 18:20), 0.1.7 (2021-02-04 18:40), 0.1.8 (2021-03-15 12:30), 0.1.9 (2021-06-26 01:00), 0.1.10 (2022-02-05 01:30), 0.1.11 (2022-08-27 00:14), 0.1.12 (2022-12-01 16:20), 0.1.13 (2023-02-02 00:30), 0.1.15 (2024-01-23 15:30)
Other packages that cited gateR R package
View gateR citation profile
Other R packages that gateR depends, imports, suggests or enhances
Complete documentation for gateR
Functions, R codes and Examples using the gateR R package
Some associated functions: gateR-package . gating . lotrrs . lrr_plot . pval_correct . pval_plot . randCyto . rrs . 
Some associated R codes: gating.R . lotrrs.R . lrr_plot.R . package.R . pval_correct.R . pval_plot.R . randCyto.R . rrs.R . utils.R . zzz.R .  Full gateR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

modelwordcloud  
Model Word Clouds
Makes a word cloud of text, sized by the frequency of the word, and colored either by user-specified ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
BayesESS  
Determining Effective Sample Size
Determines effective sample size of a parametric prior distribution in Bayesian models. For a web-b ...
Download / Learn more Package Citations See dependency  
enrichwith  
Methods to Enrich R Objects with Extra Components
Provides the "enrich" method to enrich list-like R objects with new, relevant components. The curren ...
Download / Learn more Package Citations See dependency  
bbricks  
Bayesian Methods and Graphical Model Structures for Statistical Modeling
A set of frequently used Bayesian parametric and nonparametric model structures, as well as a set of ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA