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g2f  

Find and Fill Gaps in Metabolic Networks
View on CRAN: Click here


Download and install g2f package within the R console
Install from CRAN:
install.packages("g2f")

Install from Github:
library("remotes")
install_github("cran/g2f")

Install by package version:
library("remotes")
install_version("g2f", "0.2")



Attach the package and use:
library("g2f")
Maintained by
Daniel Osorio
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-10-08
Latest Update: 2022-11-20
Description:
For a given metabolic network this package finds the gaps metabolites not produced or not consumed in any other reaction and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database httpwww.genome.jpkegg is available.
How to cite:
Daniel Osorio (2016). g2f: Find and Fill Gaps in Metabolic Networks. R package version 0.2, https://cran.r-project.org/web/packages/g2f. Accessed 21 Dec. 2024.
Previous versions and publish date:
0.1 (2016-10-08 08:48), 0.2 (2018-03-18 19:16)
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