Other packages > Find by keyword >

functClust  

Functional Clustering of Redundant Components of a System
View on CRAN: Click here


Download and install functClust package within the R console
Install from CRAN:
install.packages("functClust")

Install from Github:
library("remotes")
install_github("cran/functClust")

Install by package version:
library("remotes")
install_version("functClust", "0.1.6")



Attach the package and use:
library("functClust")
Maintained by
Benot Jaillard
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-02
Latest Update:
Description:
Cluster together the components that make up an interactivesystem on the basis of their functional redundancyfor one or more collective systemic performances.Plot the hierarchical tree of component clustersthe modelled and predicted performances of component assemblagesand other results associated with a functional clustering.Test and prioritize the significance of the different componentsthat make up the interactive systemof the different assemblages of components that make up the datasetand of the different performances observed on the component assemblages.The method finds application in ecology for instancewhere the system is an ecosystem the components are organisms or speciesand the systemic performance is the production of biomassor the respiration of the ecosystem.The method is extensively described inJaillard B Deleporte P Loreau M Violle C 2018A combinatorial analysis using observational data identifies speciesthat govern ecosystem functioningdoi10.1371journal.pone.0201135.
How to cite:
Benot Jaillard (2020). functClust: Functional Clustering of Redundant Components of a System. R package version 0.1.6, https://cran.r-project.org/web/packages/functClust. Accessed 18 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:40), 0.1.6 (2020-12-02 11:30)
Other packages that cited functClust R package
View functClust citation profile
Other R packages that functClust depends, imports, suggests or enhances
Functions, R codes and Examples using the functClust R package
Some associated functions: AIC_ . AICc . CedarCreek.2004.2006.boot.assemblages . CedarCreek.2004.2006.boot.performances . CedarCreek.2004.2006.dat . CedarCreek.2004.2006.res . CedarCreek.2004.2006.test.assemblages . CedarCreek.2004.2006.test.components . CedarCreek.2004.2006.test.performances . CedarCreek.2004.res . R2 . R2mse . add_ass_names . affect_motifs . agglomerative_ftree . amean . amean_byelt . amean_byelt_LOO . amean_byelt_jack . amean_bymot_LOO . amean_bymot_jack . argchr . argmax . argmin . asd . binary_to_logical . build_random_matrix . calibrate_amean_byelt . calibrate_amean_byelt_xpr . calibrate_amean_bymot . calibrate_amean_bymot_xpr . calibrate_byminrss . calibrate_gmean_byelt . calibrate_gmean_byelt_xpr . calibrate_gmean_bymot . calibrate_gmean_bymot_xpr . char_to_int . check_foption . check_ftree . check_plot_options . check_repeat . compact_index . complete_ftree . compute_fit_stats . compute_ftree_stats . compute_motif_stats . concat_by_line . cut_ftree . delstr_begin . delstr_end . divisive_ftree . extend_letters . extend_vector . fboot . fboot_assemblages . fboot_one_point . fboot_performances . fboot_plot . fboot_read . fboot_read_one_point . fboot_write . fboot_write_one_point . fclust . fclust_plot . fclust_predict . fclust_read . fclust_write . fcolours . fepsilon . first_argchr . first_argmax . first_argmin . fit_ftree . fletters . fnbdigits . format_fclust . fpvalue . fstd_colour . fsymbols . ftest . ftest_assemblages . ftest_components . ftest_performances . ftest_plot . ftest_plot_assemblages . ftest_plot_components . ftest_plot_performances . ftest_read . ftest_write . functClust-package . fwindow . gmean . gmean_byelt . gmean_byelt_LOO . gmean_byelt_jack . gmean_bymot_LOO . gmean_bymot_jack . gsd . index_inturn . is_binary . list_in_quote . logical_to_binary . maffect_motifs . make_fclust . mark_string . mean_fct . mse . name_clusters . name_motifs . nb_tests . notify_fclust . plot_by_page . plot_clusters_content . plot_components_box . plot_components_content . plot_fass . plot_fcomp . plot_fmotif . plot_fperf . plot_ftree . plot_ftrees . plot_motifs_box . plot_motifs_content . plot_motifs_histo . plot_motifs_infos . plot_prediction_LOO . plot_prediction_simple . plot_stats . pmse . points_sd . predict_amean_byelt . predict_amean_bymot . predict_gmean_byelt . predict_gmean_bymot . predict_performance . pvalue_dependent_R2mse . read_finputs . read_fmatrices . read_foptions . read_fstats . read_ftrees . remove_components . reverse_table . rmse . rss . rss_clustering . rss_total . shift_affectElt . simplify_ftree . sort_components . sort_ftree . sort_matrix . sort_motifs . stirling . test_dependent_R2 . test_dependent_R2mse . test_posthoc . validate_amean_byelt_LOO . validate_amean_byelt_LOO_xpr . validate_amean_byelt_jack . validate_amean_byelt_jack_xpr . validate_amean_bymot_LOO . validate_amean_bymot_LOO_xpr . validate_amean_bymot_jack . validate_amean_bymot_jack_xpr . validate_ftree . validate_gmean_byelt_LOO . validate_gmean_byelt_LOO_xpr . validate_gmean_byelt_jack . validate_gmean_byelt_jack_xpr . validate_gmean_bymot_LOO . validate_gmean_bymot_LOO_xpr . validate_gmean_bymot_jack . validate_gmean_bymot_jack_xpr . validate_using_cross_validation . wamean . wasd . wgmean . wgsd . 
Some associated R codes: boot_fclust.R . calibrating.R . clustering.R . constants.R . data.R . fclust.R . fexport.R . functClust-package.R . labelling.R . plot_fclust.R . predicting.R . stats.R . test_fclust.R . tools.R . validating.R . validating_jack.R . validating_loo.R .  Full functClust package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

downlit  
Syntax Highlighting and Automatic Linking
Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pk ...
Download / Learn more Package Citations See dependency  
eyelinker  
Import ASC Files from EyeLink Eye Trackers
Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for ...
Download / Learn more Package Citations See dependency  
injectoR  
R Dependency Injection
R dependency injection framework. Dependency injection allows a program design to follow the depend ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
data360r  
Wrapper for 'TCdata360' and 'Govdata360' API
Makes it easy to engage with the Application Program Interface (API) of the 'TCdata360' and 'Govdat ...
Download / Learn more Package Citations See dependency  
hmeasure  
The H-Measure and Other Scalar Classification Performance Metrics
Classification performance metrics that are derived from the ROC curve of a classifier. The package ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA