Other packages > Find by keyword >

func2vis  

Clean and Visualize Over Expression Results from 'ConsensusPathDB'
View on CRAN: Click here


Download and install func2vis package within the R console
Install from CRAN:
install.packages("func2vis")

Install from Github:
library("remotes")
install_github("cran/func2vis")

Install by package version:
library("remotes")
install_version("func2vis", "1.0-3")



Attach the package and use:
library("func2vis")
Maintained by
Raghvendra Mall
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-08-10
Latest Update: 2023-03-16
Description:
Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.
How to cite:
Raghvendra Mall (2020). func2vis: Clean and Visualize Over Expression Results from 'ConsensusPathDB'. R package version 1.0-3, https://cran.r-project.org/web/packages/func2vis. Accessed 04 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:40), 1.0-1 (2020-08-10 10:10), 1.0-2 (2022-08-29 13:00)
Other packages that cited func2vis R package
View func2vis citation profile
Other R packages that func2vis depends, imports, suggests or enhances
Complete documentation for func2vis
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
rCMA  
R-to-Java Interface for 'CMA-ES'
Tool for providing access to the Java version 'CMAEvolutionStrategy' of Nikolaus Hansen. 'CMA-ES' i ...
Download / Learn more Package Citations See dependency  
epigraphdb  
Interface Package for the 'EpiGraphDB' Platform
The interface package to access data from the 'EpiGraphDB' platform. It p ...
Download / Learn more Package Citations See dependency  
Maintainer: Yi Liu (view profile)
ggconf  
Simpler Appearance Modification of "ggplot2"
A flexible interface for ggplot2theme potentially saving 50 of your typing. ...
Download / Learn more Package Citations See dependency  
GLMMadaptive  
Generalized Linear Mixed Models using Adaptive Gaussian Quadrature
Fits generalized linear mixed models for a single grouping factor under maximum likelihood approxim ...
Download / Learn more Package Citations See dependency  
sValues  
Measures of Sturdiness of Regression Coefficients
Implements the s-values proposed by Ed. Leamer. It provides a context-minimal approach for sensitivi ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA