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func2vis  

Clean and Visualize Over Expression Results from 'ConsensusPathDB'
View on CRAN: Click here


Download and install func2vis package within the R console
Install from CRAN:
install.packages("func2vis")

Install from Github:
library("remotes")
install_github("cran/func2vis")

Install by package version:
library("remotes")
install_version("func2vis", "1.0-3")



Attach the package and use:
library("func2vis")
Maintained by
Raghvendra Mall
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-08-10
Latest Update: 2023-03-16
Description:
Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.
How to cite:
Raghvendra Mall (2020). func2vis: Clean and Visualize Over Expression Results from 'ConsensusPathDB'. R package version 1.0-3, https://cran.r-project.org/web/packages/func2vis
Previous versions and publish date:
1.0-1 (2020-08-10 10:10), 1.0-2 (2022-08-29 13:00)
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