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fst4pg
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Download and install fst4pg package within the R console
Install from CRAN:
install.packages("fst4pg")
Install from Github:
library("remotes")
install_github("cran/fst4pg")
Install by package version:
library("remotes")
install_version("fst4pg", "1.0.0")
Attach the package and use:
library("fst4pg")
Maintained by
Tristan Mary-Huard
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-07-03
Latest Update: 2022-07-03
Description:
Provides efficient methods to compute local and genome wide
genetic distances (corresponding to the so called Hudson Fst
parameters) through moment method, perform chromosome segmentation
into homogeneous Fst genomic regions, and selection sweep detection
for multi-population comparison. When multiple profile segmentation is
required, the procedure can be parallelized using the future package.
How to cite:
Tristan Mary-Huard (2022). fst4pg: Genetic Distance Segmentation for Population Genetics. R package version 1.0.0, https://cran.r-project.org/web/packages/fst4pg. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Complete documentation for fst4pg
Functions, R codes and Examples using
the fst4pg R package
Some associated functions: BuildFreqNbG . Compute_Denominator . Compute_Nominator . ContrastGraphSummary . ContrastSummary . ContrastTopRegions . DF4Plot1Prof . Freq.filt . Freq . HeatMap . HudsonFst.gw . HudsonFst.m . HudsonFst.plot . HudsonFst.prof . Info . MakeProfile.op . MakeProfile.sn_nomemory . MergeRegion . NbGamete . Plot1Prof . ProfilingSummary . Ratio_Average . RawPlot . Summarise1Profile . fst4pg-package .
Some associated R codes: Data.R . FstBattia.R . Functions.R . Graphs.R . fst4pg-package.R . utils.R . Full fst4pg package functions and examples
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