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fslr  

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')
View on CRAN: Click here


Download and install fslr package within the R console
Install from CRAN:
install.packages("fslr")

Install from Github:
library("remotes")
install_github("cran/fslr")

Install by package version:
library("remotes")
install_version("fslr", "2.27.0")



Attach the package and use:
library("fslr")
Maintained by
John Muschelli
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-06-13
Latest Update: 2025-09-03
Description:
Wrapper functions that interface with 'FSL' , a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.
How to cite:
John Muschelli (2014). fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB'). R package version 2.27.0, https://cran.r-project.org/web/packages/fslr. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:40), 1.0 (2014-06-13 06:17), 1.1 (2014-07-31 07:18), 1.3 (2014-11-04 02:01), 1.4.4 (2015-05-21 19:49), 1.5.0 (2015-10-21 10:01), 1.6.4.0 (2016-05-25 18:09), 1.9.2.1 (2016-09-06 23:26), 2.0 (2016-09-28 19:35), 2.12 (2017-03-07 01:06), 2.17.3 (2018-02-02 17:46), 2.22.0 (2018-11-19 22:50), 2.23.0 (2019-07-18 08:37), 2.24.1 (2019-08-05 22:40), 2.25.2 (2022-08-25 17:12), 2.25.3 (2024-05-10 06:20)
Other packages that cited fslr R package
View fslr citation profile
Other R packages that fslr depends, imports, suggests or enhances
Complete documentation for fslr
Functions, R codes and Examples using the fslr R package
Some associated functions: applytopup . aux_file-methods . bitpix-methods . cal_max-methods . cal_min-methods . check_file . checkout . data_type-methods . datatype-methods . descrip-methods . dim_-methods . download_fsl . dtifit . eddy . eddy_correct . enforce_form . face_removal_mask . fast.help . fast . flirt.help . flirt . flirt_apply . fnirt.help . fnirt . fnirt_with_affine . fnirt_with_affine_apply . fsl_anat.help . fsl_anat . fsl_applywarp.help . fsl_applywarp . fsl_atlas_dir . fsl_avscale . fsl_biascorrect . fsl_bin_tab . fsl_cluster . fsl_data_dir . fsl_deface . fsl_dice . fsl_resample . fsl_smoothest . fsl_std_dir . fsl_tsplot . fsl_version . fslabs.help . fslabs . fslacos.help . fslacos . fsladd.help . fsladd . fsland . fslasin.help . fslasin . fslatan.help . fslatan . fslbet.help . fslbet . fslbin.help . fslbin . fslbinv.help . fslbinv . fslchfiletype.help . fslchfiletype . fslcmd . fslcog . fslcos.help . fslcos . fslcpgeom.help . fslcpgeom . fsldilate . fsldir . fsldiv.help . fsldiv . fsledge.help . fsledge . fslentropy . fslepi_reg . fslerode.help . fslerode . fslexp.help . fslexp . fslfill.help . fslfill . fslfill2 . fslhd.help . fslhd . fslhd.parse . fslhelp . fslindex.help . fslindex . fsllog.help . fsllog . fslmask.help . fslmask . fslmaths.help . fslmaths . fslmean . fslmerge.help . fslmerge . fslmin_max . fslmul.help . fslmul . fslnan.help . fslnan . fslnanm.help . fslnanm . fslor . fslorient.help . fslorient . fslorient_wrap . fslorienter . fslrand.help . fslrand . fslrandn.help . fslrandn . fslrange . fslrecip.help . fslrecip . fslrem.help . fslrem . fslreorient2std.help . fslreorient2std . fslrobustfov.help . fslrobustfov . fslroi . fslsd . fslsin.help . fslsin . fslslicetimer . fslsmooth.help . fslsmooth . fslsmooth_in_mask . fslsplit.help . fslsplit . fslsqr.help . fslsqr . fslsqrt.help . fslsqrt . fslstats.help . fslstats . fslsub.help . fslsub . fslsub2.help . fslsub2 . fslsum . fslswapdim.help . fslswapdim . fsltan.help . fsltan . fslthresh.help . fslthresh . fslval.help . fslval . fslview.help . fslview . fslvol . fslvolume . fslxor . get.fsl . get.fsloutput . get.imgext . getForms . get_quickshear_mask . have.fsl . intent_code-methods . intent_name-methods . intent_p1-methods . intent_p2-methods . intent_p3-methods . invert_xfm . magic-methods . mcflirt.help . mcflirt . melodic.help . melodic . mid_sagittal_align . mni_fname . mni_img . mridefacer . orientation-methods . parse_avscale . pixdim-methods . probtrackx . qform_code-methods . read_xfm . readrpi . reverse_rpi_orient . rpi_orient . run_first_all.help . run_first_all . scl_inter-methods . scl_slope-methods . sform_code-methods . sizeof_hdr-methods . slice_code-methods . slice_duration-methods . slice_end-methods . slice_start-methods . susan.help . susan . toffset-methods . topup . vox_offset-methods . xfibres . 
Some associated R codes: applytopup.R . applywarp.R . aux_file.R . avscale.R . bitpix.R . cal_max.R . cal_min.R . convert_xfm.R . data_type.R . datatype.R . descrip.R . dim_.R . download_fsl.R . dtifit.R . eddy.R . eddy_correct.R . enforce_form.R . epi_reg.R . face_removal_mask.R . fast.R . flirt_apply.R . fnirt.R . fsl_abs.R . fsl_acos.R . fsl_add.R . fsl_anat.R . fsl_asin.R . fsl_atan.R . fsl_bet.R . fsl_bin.R . fsl_bin_tab.R . fsl_binv.R . fsl_cluster.R . fsl_cos.R . fsl_data_dir.R . fsl_deface.R . fsl_dice.R . fsl_dilate.R . fsl_div.R . fsl_edge.R . fsl_erode.R . fsl_exp.R . fsl_fill.R . fsl_index.R . fsl_log.R . fsl_mask.R . fsl_maths.R . fsl_merge.R . fsl_mul.R . fsl_nan.R . fsl_nanm.R . fsl_rand.R . fsl_randn.R . fsl_read_xfm.R . fsl_recip.R . fsl_rem.R . fsl_resample.R . fsl_slicetimer.R . fsl_smooth.R . fsl_smoothest.R . fsl_sqr.R . fsl_sqrt.R . fsl_sub.R . fsl_sub2.R . fsl_swapdim.R . fsl_tan.R . fsl_thresh.R . fsl_tsplot.R . fsl_version.R . fslabs.R . fslabs.help.R . fslacos.R . fslacos.help.R . fsladd.R . fsladd.help.R . fsland.R . fslasin.R . fslasin.help.R . fslatan.R . fslatan.help.R . fslbin.R . fslbin.help.R . fslbinv.R . fslbinv.help.R . fslchfiletype.R . fslcos.R . fslcos.help.R . fslcpgeom.R . fsldilate.R . fsldiv.R . fsldiv.help.R . fsledge.R . fsledge.help.R . fslentropy.R . fslerode.help.R . fslexp.R . fslexp.help.R . fslfill.help.R . fslfill2.R . fslgetorient.R . fslhd.R . fslindex.R . fslindex.help.R . fsllog.R . fsllog.help.R . fslmask.help.R . fslmean.R . fslmin_max.R . fslmul.R . fslmul.help.R . fslnan.R . fslnan.help.R . fslnanm.R . fslnanm.help.R . fslor.R . fslrand.R . fslrand.help.R . fslrandn.R . fslrandn.help.R . fslrecip.R . fslrecip.help.R . fslrem.R . fslrem.help.R . fslrobustfov.R . fslroi.R . fslsd.R . fslsin.R . fslsin.help.R . fslsmooth.help.R . fslsmooth_in_mask.R . fslsplit.R . fslsqr.R . fslsqr.help.R . fslsqrt.R . fslsqrt.help.R . fslsub.R . fslsub.help.R . fslsub2.help.R . fslsum.R . fsltan.R . fsltan.help.R . fslthresh.help.R . fslview.R . fslvol.R . fslvolume.R . fslxor.R . import_methods.R . intent_code.R . intent_name.R . intent_p1.R . intent_p2.R . intent_p3.R . magic.R . mcflirt.R . mid_sagittal_align.R . mni_fname.R . mridefacer.R . pixdim.R . probtrackx.R . qform.R . qform_code.R . readrpi.R . rpi_orient.R . run_first_all.R . scl_inter.R . scl_slope.R . sform.R . sform_code.R . sizeof_hdr.R . slice_code.R . slice_duration.R . slice_end.R . slice_start.R . susan.R . toffset.R . topup.R . vox_offset.R . xfibres.R . zzz.R .  Full fslr package functions and examples
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