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fluorojip  

Analysis of Chlorophyll a Fluorescence Transient Parameters
View on CRAN: Click here


Download and install fluorojip package within the R console
Install from CRAN:
install.packages("fluorojip")

Install from Github:
library("remotes")
install_github("cran/fluorojip")

Install by package version:
library("remotes")
install_version("fluorojip", "0.1.1")



Attach the package and use:
library("fluorojip")
Maintained by
Joao Everthon da Silva Ribeiro
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-04-09
Latest Update: 2026-04-09
Description:
Computes chlorophyll a fluorescence transient parameters from fluorescence summary data, including minimum and maximum fluorescence, selected transient steps, and area. Provides standard photosynthetic performance indices and fluxes per reaction center and per cross section. Includes helpers to read exported trace tables in supported 'csv' formats and validation workflows based on bundled example files, as well as visualization tools and an interactive 'shiny' interface. The implemented calculations are based on Strasser et al. (2004) <doi:10.1007/978-1-4020-3218-9_12> and Stirbet and Govindjee (2011) <doi:10.1016/j.jphotobiol.2010.12.010>.
How to cite:
Joao Everthon da Silva Ribeiro (2026). fluorojip: Analysis of Chlorophyll a Fluorescence Transient Parameters. R package version 0.1.1, https://cran.r-project.org/web/packages/fluorojip. Accessed 16 Jul. 2026.
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Complete documentation for fluorojip
Functions, R codes and Examples using the fluorojip R package
Full fluorojip package functions and examples
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