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flocker  

Flexible Occupancy Estimation with Stan
View on CRAN: Click here


Download and install flocker package within the R console
Install from CRAN:
install.packages("flocker")

Install from Github:
library("remotes")
install_github("cran/flocker")

Install by package version:
library("remotes")
install_version("flocker", "1.0-0")



Attach the package and use:
library("flocker")
Maintained by
Jacob B. Socolar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-02-05
Latest Update: 2024-02-05
Description:
Fit occupancy models in 'Stan' via 'brms'. The full variety of 'brms' formula-based effects structures are available to use in multiple classes of occupancy model, including single-season models, models with data augmentation for never-observed species, dynamic (multiseason) models with explicit colonization and extinction processes, and dynamic models with autologistic occupancy dynamics. Formulas can be specified for all relevant distributional terms, including detection and one or more of occupancy, colonization, extinction, and autologistic depending on the model type. Several important forms of model post-processing are provided. References: B
How to cite:
Jacob B. Socolar (2024). flocker: Flexible Occupancy Estimation with Stan. R package version 1.0-0, https://cran.r-project.org/web/packages/flocker. Accessed 13 Mar. 2026.
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